Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 93006777

GI number: 93006777

Start: 2409911

End: 2410921

Strand: Reverse

Name: yjjV [H]

Synonym: Pcryo_1953

Alternate gene names: 93006777

Gene position: 2410921-2409911 (Counterclockwise)

Preceding gene: 93006778

Following gene: 93006776

Centisome position: 78.79

GC content: 41.44

Gene sequence:

>1011_bases
ATGACGGGGATTGATACATCAGCTATCAATAATAAAGTAAGAACGAAGATTTTTCCTTTAATTGATACTCATACGCATTT
TGATGCTCCTGTGTTTGATAAGGATAGAGGTGAGCAGGCGCAATTTGCCTATGATAAAGGTGTGCGCCATTTAGTTTTGG
TTGGCTACTTGCACCGATATTTTGCACGGCTTTATGAGAATCAGCAGCAGATAAATGATCTTTGTCAGTTGGATAAAAAA
AATTGTTTGAACCAAAGAAACCGTTTTCCTAAAGTACATATTGCGCTAGGTTTACATCCTTTTTATATTGAGCAGCATAC
AGAAGCCCATTTGGAAGAAATGGCGCAAATGCTAAATGAACAGCGTCCATTGGCCATTGGTGAAATAGGTTTAGATACTT
TTACCGATGCCATGAAGCAGCCTGAAACGTTTGCCAAACAACAGCGGTTTTTTATTGCGCAGTTAGATATGGCAGCGGCA
CATCAGCTACCTGTTATGCTGCATATTCGTAAAGCACATGCCGAAGCACTGGCTTTACTAAAAGCGCATAATTATGACGC
GCATAAGCTTGGCGGCATTGCCCATAGTTTTAGTGGCGGTGTACAAGAAGCCAAAGCCTTTGCGAAATTAGGGTTTAAGC
TTGGCGTGACTGGGCAAATAACCAATCCCAATGCGAAAAAACTGCGCCTTGCCATTCAAGCTGCGGTTGAGAGTTATGGT
ATTGACTGTTTGGTTATCGAGACAGATTGCCCCGATATGATGCCTATCCTAGGCCAGACGCTAGATAATAATTTAGAAGA
TGCGTCATCTAATAACGCGTCTGTGCTTGGACGAGATAAAAATAGCGAATGGGGTGATACATCTATGCATAGTAGGAATG
TTCCTGCAAATTTGCTTTATGTATTACATAGCTTGAGCGAATTACTAAATGTTCCTGCGGCTATTCTCGCTCAGCAATTG
TGGCTCAACAGTTGTAATGCTTTGCAAACTAAGTGGTCTTATACGCTTTGA

Upstream 100 bases:

>100_bases
AAAAAGCTAAAAGTACAGATAGTGAGTAAAATGATTATTTAGAAAGTAGTTAATGGGAAAGCTGACTTATCATAGCAATG
ATGAATTTTGGAGTTTCTTG

Downstream 100 bases:

>100_bases
AGTTTTTAGCACATACTAATCAATATATAGATGGTTTAACAATAAAATTTTTAAAAGAGTTTCTACATCGTTATGAATGA
AGACACACAGATGCAGTCAG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTGIDTSAINNKVRTKIFPLIDTHTHFDAPVFDKDRGEQAQFAYDKGVRHLVLVGYLHRYFARLYENQQQINDLCQLDKK
NCLNQRNRFPKVHIALGLHPFYIEQHTEAHLEEMAQMLNEQRPLAIGEIGLDTFTDAMKQPETFAKQQRFFIAQLDMAAA
HQLPVMLHIRKAHAEALALLKAHNYDAHKLGGIAHSFSGGVQEAKAFAKLGFKLGVTGQITNPNAKKLRLAIQAAVESYG
IDCLVIETDCPDMMPILGQTLDNNLEDASSNNASVLGRDKNSEWGDTSMHSRNVPANLLYVLHSLSELLNVPAAILAQQL
WLNSCNALQTKWSYTL

Sequences:

>Translated_336_residues
MTGIDTSAINNKVRTKIFPLIDTHTHFDAPVFDKDRGEQAQFAYDKGVRHLVLVGYLHRYFARLYENQQQINDLCQLDKK
NCLNQRNRFPKVHIALGLHPFYIEQHTEAHLEEMAQMLNEQRPLAIGEIGLDTFTDAMKQPETFAKQQRFFIAQLDMAAA
HQLPVMLHIRKAHAEALALLKAHNYDAHKLGGIAHSFSGGVQEAKAFAKLGFKLGVTGQITNPNAKKLRLAIQAAVESYG
IDCLVIETDCPDMMPILGQTLDNNLEDASSNNASVLGRDKNSEWGDTSMHSRNVPANLLYVLHSLSELLNVPAAILAQQL
WLNSCNALQTKWSYTL
>Mature_335_residues
TGIDTSAINNKVRTKIFPLIDTHTHFDAPVFDKDRGEQAQFAYDKGVRHLVLVGYLHRYFARLYENQQQINDLCQLDKKN
CLNQRNRFPKVHIALGLHPFYIEQHTEAHLEEMAQMLNEQRPLAIGEIGLDTFTDAMKQPETFAKQQRFFIAQLDMAAAH
QLPVMLHIRKAHAEALALLKAHNYDAHKLGGIAHSFSGGVQEAKAFAKLGFKLGVTGQITNPNAKKLRLAIQAAVESYGI
DCLVIETDCPDMMPILGQTLDNNLEDASSNNASVLGRDKNSEWGDTSMHSRNVPANLLYVLHSLSELLNVPAAILAQQLW
LNSCNALQTKWSYTL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=36.5758754863813, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI48994985, Length=236, Percent_Identity=27.5423728813559, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787342, Length=245, Percent_Identity=26.9387755102041, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17559024, Length=245, Percent_Identity=26.1224489795918, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24586117, Length=264, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221330018, Length=264, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 37682; Mature: 37550

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGIDTSAINNKVRTKIFPLIDTHTHFDAPVFDKDRGEQAQFAYDKGVRHLVLVGYLHRY
CCCCCCHHHCCHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHH
FARLYENQQQINDLCQLDKKNCLNQRNRFPKVHIALGLHPFYIEQHTEAHLEEMAQMLNE
HHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
QRPLAIGEIGLDTFTDAMKQPETFAKQQRFFIAQLDMAAAHQLPVMLHIRKAHAEALALL
CCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
KAHNYDAHKLGGIAHSFSGGVQEAKAFAKLGFKLGVTGQITNPNAKKLRLAIQAAVESYG
HHCCCCHHHHCCHHHHHCCCHHHHHHHHHHCCEECCEEEECCCCHHHHHHHHHHHHHHHC
IDCLVIETDCPDMMPILGQTLDNNLEDASSNNASVLGRDKNSEWGDTSMHSRNVPANLLY
CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
VLHSLSELLNVPAAILAQQLWLNSCNALQTKWSYTL
HHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure 
TGIDTSAINNKVRTKIFPLIDTHTHFDAPVFDKDRGEQAQFAYDKGVRHLVLVGYLHRY
CCCCCHHHCCHHHHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHH
FARLYENQQQINDLCQLDKKNCLNQRNRFPKVHIALGLHPFYIEQHTEAHLEEMAQMLNE
HHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
QRPLAIGEIGLDTFTDAMKQPETFAKQQRFFIAQLDMAAAHQLPVMLHIRKAHAEALALL
CCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
KAHNYDAHKLGGIAHSFSGGVQEAKAFAKLGFKLGVTGQITNPNAKKLRLAIQAAVESYG
HHCCCCHHHHCCHHHHHCCCHHHHHHHHHHCCEECCEEEECCCCHHHHHHHHHHHHHHHC
IDCLVIETDCPDMMPILGQTLDNNLEDASSNNASVLGRDKNSEWGDTSMHSRNVPANLLY
CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
VLHSLSELLNVPAAILAQQLWLNSCNALQTKWSYTL
HHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]