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The map label for this gene is ygdL [H]

Identifier: 93006776

GI number: 93006776

Start: 2408948

End: 2409838

Strand: Reverse

Name: ygdL [H]

Synonym: Pcryo_1952

Alternate gene names: 93006776

Gene position: 2409838-2408948 (Counterclockwise)

Preceding gene: 93006777

Following gene: 93006775

Centisome position: 78.76

GC content: 45.12

Gene sequence:

>891_bases
ATGAATGAAGACACACAGATGCAGTCAGATATTATCCAGCCAGAGCCTATCGAAGAGCAAATGTTTGTATCTGAAATATT
AGAGACACCTGATAGAGATGCGGAGCAGTATGAGCGCCGTTTTAAAGGTACTCAGACACTGTATGGTAATGCTGCGGTAG
ATACATTTTCTGCTGCGCATGTTTATGTTATTGGGGTAGGCGGTGTCGGTTCCTGGGCAGCAGAGGCTTTGGCGCGTACG
GCTGTTGGTACTATTACATTAATTGATTTAGATATATTGGTAGCATCCAATGTCAATCGGCAGCTGCCCTCTTTAGATAG
TACCTTTGGGCAAAGTAAAATTGAGGCGATGGCAGCACGTATTCGTGAAATCAATCCAAAAGCCACGTTGCATTTGGTTG
ATGATTTTTTGACCGCTGAAAATGTCGCAACATTGCTGCCCAGTCGTGAAGAAGCAAAAACGGCGGCACAAACCGCTCCG
ATTGTGATTTTAGACTGTATCGATGATATGGATGCCAAGCTTGCCATTGCTTTGCATTGCCGCTTTAACAAACTAAAATT
GGTCTGTGCTGGCGGGGCAGGTGGTAAAATAGACCCCAGTCAGATCAGAGTCGGCGATTTACGAGACACCTATCAAGATC
CATTATTGGCCAAATTACGTAATAAATTGCGCCATGAAAAGGGCATTAATAGTGCCCTAAAAGAGAAATTTGGTATCAAG
TGTGTTTATTCGACAGAACCACCGCGCGTAGACAAGAGCTGTCAAACAGGTGGTTTGCACTGTGGTGGTTATGGTTCGGC
GGTCGTCGTCACCTCAGTAGTTGCCATGCTTATGGTGAGTGAGGCATTACAATTATTGCTTAAGCAGGCGGCTGTTAAAC
CAAGCCTCTGA

Upstream 100 bases:

>100_bases
GCAAACTAAGTGGTCTTATACGCTTTGAAGTTTTTAGCACATACTAATCAATATATAGATGGTTTAACAATAAAATTTTT
AAAAGAGTTTCTACATCGTT

Downstream 100 bases:

>100_bases
TATGAATTTATGGAGTCCACCTTGTCTATATCCAACGTACCAGACTTTGATTACCCTATCGCAGAAGATGACGCTGAGCG
TATCAATAGGCTCAAAAAAT

Product: UBA/THIF-type NAD/FAD binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNEDTQMQSDIIQPEPIEEQMFVSEILETPDRDAEQYERRFKGTQTLYGNAAVDTFSAAHVYVIGVGGVGSWAAEALART
AVGTITLIDLDILVASNVNRQLPSLDSTFGQSKIEAMAARIREINPKATLHLVDDFLTAENVATLLPSREEAKTAAQTAP
IVILDCIDDMDAKLAIALHCRFNKLKLVCAGGAGGKIDPSQIRVGDLRDTYQDPLLAKLRNKLRHEKGINSALKEKFGIK
CVYSTEPPRVDKSCQTGGLHCGGYGSAVVVTSVVAMLMVSEALQLLLKQAAVKPSL

Sequences:

>Translated_296_residues
MNEDTQMQSDIIQPEPIEEQMFVSEILETPDRDAEQYERRFKGTQTLYGNAAVDTFSAAHVYVIGVGGVGSWAAEALART
AVGTITLIDLDILVASNVNRQLPSLDSTFGQSKIEAMAARIREINPKATLHLVDDFLTAENVATLLPSREEAKTAAQTAP
IVILDCIDDMDAKLAIALHCRFNKLKLVCAGGAGGKIDPSQIRVGDLRDTYQDPLLAKLRNKLRHEKGINSALKEKFGIK
CVYSTEPPRVDKSCQTGGLHCGGYGSAVVVTSVVAMLMVSEALQLLLKQAAVKPSL
>Mature_296_residues
MNEDTQMQSDIIQPEPIEEQMFVSEILETPDRDAEQYERRFKGTQTLYGNAAVDTFSAAHVYVIGVGGVGSWAAEALART
AVGTITLIDLDILVASNVNRQLPSLDSTFGQSKIEAMAARIREINPKATLHLVDDFLTAENVATLLPSREEAKTAAQTAP
IVILDCIDDMDAKLAIALHCRFNKLKLVCAGGAGGKIDPSQIRVGDLRDTYQDPLLAKLRNKLRHEKGINSALKEKFGIK
CVYSTEPPRVDKSCQTGGLHCGGYGSAVVVTSVVAMLMVSEALQLLLKQAAVKPSL

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=270, Percent_Identity=43.3333333333333, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1787048, Length=193, Percent_Identity=28.4974093264249, Blast_Score=68, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322825, Length=218, Percent_Identity=31.1926605504587, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321790, Length=219, Percent_Identity=25.5707762557078, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 32024; Mature: 32024

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEDTQMQSDIIQPEPIEEQMFVSEILETPDRDAEQYERRFKGTQTLYGNAAVDTFSAAH
CCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCHHHCCCCCE
VYVIGVGGVGSWAAEALARTAVGTITLIDLDILVASNVNRQLPSLDSTFGQSKIEAMAAR
EEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHH
IREINPKATLHLVDDFLTAENVATLLPSREEAKTAAQTAPIVILDCIDDMDAKLAIALHC
HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEE
RFNKLKLVCAGGAGGKIDPSQIRVGDLRDTYQDPLLAKLRNKLRHEKGINSALKEKFGIK
ECCEEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCE
CVYSTEPPRVDKSCQTGGLHCGGYGSAVVVTSVVAMLMVSEALQLLLKQAAVKPSL
EEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNEDTQMQSDIIQPEPIEEQMFVSEILETPDRDAEQYERRFKGTQTLYGNAAVDTFSAAH
CCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCHHHCCCCCE
VYVIGVGGVGSWAAEALARTAVGTITLIDLDILVASNVNRQLPSLDSTFGQSKIEAMAAR
EEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHH
IREINPKATLHLVDDFLTAENVATLLPSREEAKTAAQTAPIVILDCIDDMDAKLAIALHC
HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEE
RFNKLKLVCAGGAGGKIDPSQIRVGDLRDTYQDPLLAKLRNKLRHEKGINSALKEKFGIK
ECCEEEEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCE
CVYSTEPPRVDKSCQTGGLHCGGYGSAVVVTSVVAMLMVSEALQLLLKQAAVKPSL
EEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]