Click here to switch to the map view.

The map label for this gene is yddU [C]

Identifier: 93006771

GI number: 93006771

Start: 2401011

End: 2403104

Strand: Reverse

Name: yddU [C]

Synonym: Pcryo_1947

Alternate gene names: 93006771

Gene position: 2403104-2401011 (Counterclockwise)

Preceding gene: 93006772

Following gene: 93006770

Centisome position: 78.54

GC content: 42.22

Gene sequence:

>2094_bases
ATGCGTACTCAGTCTCTCTTGAACTTATTGGTTATCGATGCTGATCAGCTTTATGCTGAGCGCCTTGTAGACTTGCTCGG
TTCATACTATGACAGCGTGAATTTAGGTTTTTTGGACGATAAAGATGAGTTGCTAAAATCATTGCGTCAATCATGGGATG
TGTTGGTTTTTGGTCAAGCGTATGATATGAGTTTTACCGACGTGGTTGCTATCATTCAAGAGCAAGATATTGACTTACCA
TCGGTTTGTTTGATAAGTAAAAACACGGTAGCCAACGCTCACAATGACGAAGGCTTACCGTCTATCATGAATGGTACGAT
GGTTAAGGCACTCTATGTAGAGCAAGAAATGGCAGTCATCATGGCTATTCGCTTATTGCACGAAAACTTGCACAGTCGCC
AACAGCTTAAGACATTGCAGTCTGTGCTCTCTGAGGCAGAACAGCGCGCAAACGTATTGATTAAAAACTCAAAAAGTGCA
GTCGCATACATTGATCAAGGGATTCATATCTTTGCCAATGATCCGTATCTGCAGTTATTTGGTTTTGAGGCGATGAACGA
TATTATCGGTATACCTGTGATTGATTTGATCGCAGGCGGTGATAATGTTAAAGCTGTTAAACAGTTTTTGCGTCAGTTCG
ATAAAGGGAACCGTAAAGACGTTGAGTTTAATTTTGAGAGTAGACGTAAGGATGGCAGTACGTTTGAAGCAAAACTACAA
TTGGCAATAGCGACACTAGATGGTGAGCCGGTCACCCAGATTATTATTCAACAAAATAATAGCAATAGCATTGAGGTCGC
CAAACGTTTGGCTGAAGCTGAGCGTAAAGACAGCTTGACGGGCATTGATAATCGCCACAGCTTTGAAGAGCAGCTGGCGG
CAGCATATGAACAGGCAAGAAAAGGCGCTATGACGGCGGCACTCTTGTATGTACAACTCGATAATGTCGGAAAAATTAGA
AGCAGTTTAGGTCTACAAGGTATTGATAGCACGGTGAAACAAGTCGCTAATACCTTAGATGAGCTGGTAGTCGATGGTCA
TGTCAGCCGCTTTAGTGATACAGCATTTACTATTTTGGTAGAAAATCAGACGACAGCTGCGCTTGAAAAGCTGGCTGAAC
AGATTGGCATGAGTATCAGTAAGATGCTTATTGAAGTGGATAAGCGCACAACCAATACGACAGCAAGTACTGCTATTGTT
AAAATTGAAAAAAATACGCCTGAGCCTAGAGTGTTGCTTGAGCGCGCTATGGATGCTATCAATCAAATCATGATTGAGAC
CTCCAATCATGGCGGCCGCTATCATTTATATGATGCAAGTGAACATGCCAATAGTGACGATCATGCGCTAGCAGAATCTC
TGGTTGATGCCATTACCAATAATCGCTTTGAGTTATTGTTCCAGCCCATATATGACATCAATAATGACCGTAGTGACTTC
TTTGAAGTATTCCTGCGGCTGCCGCTAGCAGATGCTGAGAATACCGTATTGACGCCAGAACAGTTTATGGCGGTTGCAAA
ATCTCATCAATTATTAGAAAAAATAGACCGCTGGGTATTAATTAATGCCTGTAAGAGAATCAATGAAGTGCGTAAAACTC
ATCCAGAGGCGCGGTTACTGGTACAGCTAACCAGTGCGTCCTTAATCGATAAAAAACTGCCCAGTGTTGCAAGCCAGCTC
ATCAATGCCATCGGTGGTAAAGCTGGGGCGTTGACACTGCAGTTCAATGAAAAAGACATCTCAGATTACTTAACAGTAGC
GAAATCTCAATTCACCGCGCTCAGTCAGGTAAACTGCAAGCTTAGCATCAATAATTTTGGCTCATCCATAAAATCTGTGG
AGCTTGCCAATTTTGTTCATCCTAATATGGTGCGTTTAGCCCATAATTATGTCGAAGGGATTGATGCCGCTGACAATTTA
GAAACGGTCAAATCAATTATCGTACGTACCAATGAGATTAATGTTGATGTATTGATGCCTTATATTGAAGATGCTGCAAC
CATGTCTGTTGCATGGAGTGTCGGCGCACGCTACCTACAAGGCAATTATTTAGAAATGCCGAGTAACAGTATCAAAGTCT
CTAATGAGAGTTAG

Upstream 100 bases:

>100_bases
ATAACTACGACGCTGTTTCTTAATATTCTGCTATCTTTTATATATTTGACGACAGCTCAGCGGCGATTCATATTATTTTT
TAAGATTAAAAAGGCTTTCT

Downstream 100 bases:

>100_bases
GTCTTATTTTATATTCATAAATACTATATAGATCTCTGTATTTATGGTCTACAGACGGCTATCGATGTCTATCAACCTTT
GCATTATAGGATGTTTGATG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 697; Mature: 697

Protein sequence:

>697_residues
MRTQSLLNLLVIDADQLYAERLVDLLGSYYDSVNLGFLDDKDELLKSLRQSWDVLVFGQAYDMSFTDVVAIIQEQDIDLP
SVCLISKNTVANAHNDEGLPSIMNGTMVKALYVEQEMAVIMAIRLLHENLHSRQQLKTLQSVLSEAEQRANVLIKNSKSA
VAYIDQGIHIFANDPYLQLFGFEAMNDIIGIPVIDLIAGGDNVKAVKQFLRQFDKGNRKDVEFNFESRRKDGSTFEAKLQ
LAIATLDGEPVTQIIIQQNNSNSIEVAKRLAEAERKDSLTGIDNRHSFEEQLAAAYEQARKGAMTAALLYVQLDNVGKIR
SSLGLQGIDSTVKQVANTLDELVVDGHVSRFSDTAFTILVENQTTAALEKLAEQIGMSISKMLIEVDKRTTNTTASTAIV
KIEKNTPEPRVLLERAMDAINQIMIETSNHGGRYHLYDASEHANSDDHALAESLVDAITNNRFELLFQPIYDINNDRSDF
FEVFLRLPLADAENTVLTPEQFMAVAKSHQLLEKIDRWVLINACKRINEVRKTHPEARLLVQLTSASLIDKKLPSVASQL
INAIGGKAGALTLQFNEKDISDYLTVAKSQFTALSQVNCKLSINNFGSSIKSVELANFVHPNMVRLAHNYVEGIDAADNL
ETVKSIIVRTNEINVDVLMPYIEDAATMSVAWSVGARYLQGNYLEMPSNSIKVSNES

Sequences:

>Translated_697_residues
MRTQSLLNLLVIDADQLYAERLVDLLGSYYDSVNLGFLDDKDELLKSLRQSWDVLVFGQAYDMSFTDVVAIIQEQDIDLP
SVCLISKNTVANAHNDEGLPSIMNGTMVKALYVEQEMAVIMAIRLLHENLHSRQQLKTLQSVLSEAEQRANVLIKNSKSA
VAYIDQGIHIFANDPYLQLFGFEAMNDIIGIPVIDLIAGGDNVKAVKQFLRQFDKGNRKDVEFNFESRRKDGSTFEAKLQ
LAIATLDGEPVTQIIIQQNNSNSIEVAKRLAEAERKDSLTGIDNRHSFEEQLAAAYEQARKGAMTAALLYVQLDNVGKIR
SSLGLQGIDSTVKQVANTLDELVVDGHVSRFSDTAFTILVENQTTAALEKLAEQIGMSISKMLIEVDKRTTNTTASTAIV
KIEKNTPEPRVLLERAMDAINQIMIETSNHGGRYHLYDASEHANSDDHALAESLVDAITNNRFELLFQPIYDINNDRSDF
FEVFLRLPLADAENTVLTPEQFMAVAKSHQLLEKIDRWVLINACKRINEVRKTHPEARLLVQLTSASLIDKKLPSVASQL
INAIGGKAGALTLQFNEKDISDYLTVAKSQFTALSQVNCKLSINNFGSSIKSVELANFVHPNMVRLAHNYVEGIDAADNL
ETVKSIIVRTNEINVDVLMPYIEDAATMSVAWSVGARYLQGNYLEMPSNSIKVSNES
>Mature_697_residues
MRTQSLLNLLVIDADQLYAERLVDLLGSYYDSVNLGFLDDKDELLKSLRQSWDVLVFGQAYDMSFTDVVAIIQEQDIDLP
SVCLISKNTVANAHNDEGLPSIMNGTMVKALYVEQEMAVIMAIRLLHENLHSRQQLKTLQSVLSEAEQRANVLIKNSKSA
VAYIDQGIHIFANDPYLQLFGFEAMNDIIGIPVIDLIAGGDNVKAVKQFLRQFDKGNRKDVEFNFESRRKDGSTFEAKLQ
LAIATLDGEPVTQIIIQQNNSNSIEVAKRLAEAERKDSLTGIDNRHSFEEQLAAAYEQARKGAMTAALLYVQLDNVGKIR
SSLGLQGIDSTVKQVANTLDELVVDGHVSRFSDTAFTILVENQTTAALEKLAEQIGMSISKMLIEVDKRTTNTTASTAIV
KIEKNTPEPRVLLERAMDAINQIMIETSNHGGRYHLYDASEHANSDDHALAESLVDAITNNRFELLFQPIYDINNDRSDF
FEVFLRLPLADAENTVLTPEQFMAVAKSHQLLEKIDRWVLINACKRINEVRKTHPEARLLVQLTSASLIDKKLPSVASQL
INAIGGKAGALTLQFNEKDISDYLTVAKSQFTALSQVNCKLSINNFGSSIKSVELANFVHPNMVRLAHNYVEGIDAADNL
ETVKSIIVRTNEINVDVLMPYIEDAATMSVAWSVGARYLQGNYLEMPSNSIKVSNES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=420, Percent_Identity=21.4285714285714, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=24.5059288537549, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=314, Percent_Identity=21.0191082802548, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR011006
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 77516; Mature: 77516

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTQSLLNLLVIDADQLYAERLVDLLGSYYDSVNLGFLDDKDELLKSLRQSWDVLVFGQA
CCHHHHHHHHEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
YDMSFTDVVAIIQEQDIDLPSVCLISKNTVANAHNDEGLPSIMNGTMVKALYVEQEMAVI
CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
MAIRLLHENLHSRQQLKTLQSVLSEAEQRANVLIKNSKSAVAYIDQGIHIFANDPYLQLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCEEEEECCCEEEEE
GFEAMNDIIGIPVIDLIAGGDNVKAVKQFLRQFDKGNRKDVEFNFESRRKDGSTFEAKLQ
CHHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCEEEEEE
LAIATLDGEPVTQIIIQQNNSNSIEVAKRLAEAERKDSLTGIDNRHSFEEQLAAAYEQAR
EEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
KGAMTAALLYVQLDNVGKIRSSLGLQGIDSTVKQVANTLDELVVDGHVSRFSDTAFTILV
CCHHHEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEE
ENQTTAALEKLAEQIGMSISKMLIEVDKRTTNTTASTAIVKIEKNTPEPRVLLERAMDAI
ECCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
NQIMIETSNHGGRYHLYDASEHANSDDHALAESLVDAITNNRFELLFQPIYDINNDRSDF
HHHEEEECCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHH
FEVFLRLPLADAENTVLTPEQFMAVAKSHQLLEKIDRWVLINACKRINEVRKTHPEARLL
HHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VQLTSASLIDKKLPSVASQLINAIGGKAGALTLQFNEKDISDYLTVAKSQFTALSQVNCK
EEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEE
LSINNFGSSIKSVELANFVHPNMVRLAHNYVEGIDAADNLETVKSIIVRTNEINVDVLMP
EEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEH
YIEDAATMSVAWSVGARYLQGNYLEMPSNSIKVSNES
HHHCHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCC
>Mature Secondary Structure
MRTQSLLNLLVIDADQLYAERLVDLLGSYYDSVNLGFLDDKDELLKSLRQSWDVLVFGQA
CCHHHHHHHHEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
YDMSFTDVVAIIQEQDIDLPSVCLISKNTVANAHNDEGLPSIMNGTMVKALYVEQEMAVI
CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
MAIRLLHENLHSRQQLKTLQSVLSEAEQRANVLIKNSKSAVAYIDQGIHIFANDPYLQLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCEEEEECCCEEEEE
GFEAMNDIIGIPVIDLIAGGDNVKAVKQFLRQFDKGNRKDVEFNFESRRKDGSTFEAKLQ
CHHHHHHHCCCCHHHEEECCCCHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCEEEEEE
LAIATLDGEPVTQIIIQQNNSNSIEVAKRLAEAERKDSLTGIDNRHSFEEQLAAAYEQAR
EEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
KGAMTAALLYVQLDNVGKIRSSLGLQGIDSTVKQVANTLDELVVDGHVSRFSDTAFTILV
CCHHHEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEE
ENQTTAALEKLAEQIGMSISKMLIEVDKRTTNTTASTAIVKIEKNTPEPRVLLERAMDAI
ECCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
NQIMIETSNHGGRYHLYDASEHANSDDHALAESLVDAITNNRFELLFQPIYDINNDRSDF
HHHEEEECCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHH
FEVFLRLPLADAENTVLTPEQFMAVAKSHQLLEKIDRWVLINACKRINEVRKTHPEARLL
HHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VQLTSASLIDKKLPSVASQLINAIGGKAGALTLQFNEKDISDYLTVAKSQFTALSQVNCK
EEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCEEE
LSINNFGSSIKSVELANFVHPNMVRLAHNYVEGIDAADNLETVKSIIVRTNEINVDVLMP
EEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEH
YIEDAATMSVAWSVGARYLQGNYLEMPSNSIKVSNES
HHHCHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7763384 [H]