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The map label for this gene is 93006770

Identifier: 93006770

GI number: 93006770

Start: 2400413

End: 2400868

Strand: Reverse

Name: 93006770

Synonym: Pcryo_1946

Alternate gene names: NA

Gene position: 2400868-2400413 (Counterclockwise)

Preceding gene: 93006771

Following gene: 93006769

Centisome position: 78.46

GC content: 45.83

Gene sequence:

>456_bases
ATGTCTATAGTCAATAAATATCAACTGGTCGGTATGCTTGTCGCCGCTTTGCTGCTAAGTGCTTGTGAGAAAACGCCGCC
TGATTACCGTGCTACTGTTACGCTACCGCTTTATATTGAAGGCGATGCCGATAATGGTGCACTCATATATCAAGATGCTT
GTGGTCAGTGTCATCAGTTAAACCCCGGTCTCAATAAAAAAGGCCCGCAGCTGATGAATATTTATGGCGCGCCGGCAGCG
GAACTTGCAGATTATACTTATAGTGAAGGACTTAAAGCCTCGGGTTGGGTATGGGATGCTCAAACGCTTGATACTTATAT
TGCGGATGCTGAAAAAGCCATGCCAGATTCTAAAATGCTGTCAGACCCGATGCCAGATTCTAAAGAGCGCGCTGATGTGA
TCGCTTACTTGTCTACCCTTCGCGCAGCTGCCCCAAGTGTTGAAAATGATAAATAA

Upstream 100 bases:

>100_bases
TATGGTCTACAGACGGCTATCGATGTCTATCAACCTTTGCATTATAGGATGTTTGATGTAGACTCATCGACATCAATACC
TATTAATTAAAGATGACACC

Downstream 100 bases:

>100_bases
CCCTTACCTGATACCTTTTTTTCCTCACAAATTAAACCCATAATCGCCTTAACGCAGCCCCTAATATGCCCCTTTCATCG
AAACATCAGCTGATATCAGA

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSIVNKYQLVGMLVAALLLSACEKTPPDYRATVTLPLYIEGDADNGALIYQDACGQCHQLNPGLNKKGPQLMNIYGAPAA
ELADYTYSEGLKASGWVWDAQTLDTYIADAEKAMPDSKMLSDPMPDSKERADVIAYLSTLRAAAPSVENDK

Sequences:

>Translated_151_residues
MSIVNKYQLVGMLVAALLLSACEKTPPDYRATVTLPLYIEGDADNGALIYQDACGQCHQLNPGLNKKGPQLMNIYGAPAA
ELADYTYSEGLKASGWVWDAQTLDTYIADAEKAMPDSKMLSDPMPDSKERADVIAYLSTLRAAAPSVENDK
>Mature_150_residues
SIVNKYQLVGMLVAALLLSACEKTPPDYRATVTLPLYIEGDADNGALIYQDACGQCHQLNPGLNKKGPQLMNIYGAPAAE
LADYTYSEGLKASGWVWDAQTLDTYIADAEKAMPDSKMLSDPMPDSKERADVIAYLSTLRAAAPSVENDK

Specific function: Unknown

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=34.3434343434343, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17566554, Length=107, Percent_Identity=38.3177570093458, Blast_Score=85, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=97, Percent_Identity=32.9896907216495, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320796, Length=99, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322508, Length=101, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17137204, Length=100, Percent_Identity=36, Blast_Score=73, Evalue=8e-14,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=33, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 16334; Mature: 16202

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIVNKYQLVGMLVAALLLSACEKTPPDYRATVTLPLYIEGDADNGALIYQDACGQCHQL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCC
NPGLNKKGPQLMNIYGAPAAELADYTYSEGLKASGWVWDAQTLDTYIADAEKAMPDSKML
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHH
SDPMPDSKERADVIAYLSTLRAAAPSVENDK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SIVNKYQLVGMLVAALLLSACEKTPPDYRATVTLPLYIEGDADNGALIYQDACGQCHQL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCC
NPGLNKKGPQLMNIYGAPAAELADYTYSEGLKASGWVWDAQTLDTYIADAEKAMPDSKML
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCHHH
SDPMPDSKERADVIAYLSTLRAAAPSVENDK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2823792; 8809072 [H]