| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is hemR [H]
Identifier: 93006736
GI number: 93006736
Start: 2360796
End: 2362889
Strand: Reverse
Name: hemR [H]
Synonym: Pcryo_1912
Alternate gene names: 93006736
Gene position: 2362889-2360796 (Counterclockwise)
Preceding gene: 93006738
Following gene: 93006735
Centisome position: 77.22
GC content: 45.75
Gene sequence:
>2094_bases ATGCGCGAAGTAAAATTATCAAGATTTTCTAGTCGATTGACCGTATTGTCTATGGGCGTAGCAGCAGTATTGGGGGCACA AGCGGCGAGTGCTACGACCTCAGCAGATATGCCGAGCACTACCTTACAGACCATCACAGTGACGGCAAACAGCTCAGTAC GTGAAAGCGTGCAAGAGGGCGGTGTTGATGTTGAAGGCTATACCCCAGCTGCGCAGGCAAGCCACTTAAGTGATTTTTTA AATGTCGTACCCGGTGTTACGGTAGGCGGTACGTCAGCGGTCAATCAGCGTATACGCGTACGTGGACTCGATGATACCAA TTTGAAAGTGACCATTGATGGCGCTCGCCAAGAAGGCACGCTGTTTTATCATATGGGCGATGTGACCATTGACCCTGATT TGCTAAAACAAGCGGAAGTATCGGTCGGTAATAACTCAGTGACACTAGGTAACGATGCGCTAGGTGGCGCAGTTGCTTTT AAAACTGTTGATGCCGCAGATCTACTAAAACCGGGACAAAAAATCGGTGCCAAACTGCACGCAGGTTATGCTAGTAATAA TGATGAATTGCTCACCTCAGCGACTGTGTTTGCTGCCCCAACGGATAATATAGACTTACTGGCTTATTATGGTCAGCGTA ATGCCAATGCTGGTGAAGATGGCGAAGGTCGTAAGATCCAAACGGAAGATAGCAAAGGCGAGAATATTTTATTAAAGGCG GGCGCGTATATTGCCAATGACCATCACGTAGGGGCTAGCTTTAGCCGTACCGAAAACGAAGGCATGTTCCCATTACGCCC AGATTTCCCAGCAAGCCCAGGCGTTGGCAGTTGGAATGAAATTCTACCGCAAAAGGTTAAGCGTGATACTTATGGGCTGG ACTATAGCTACAATCCTGCCAGTAACTTGGTCAATGTCGATACCAATGTTTATCAAACCGAAACGCAGATTTCACGCGAT ACGGACTATACGACAAAGCCAGGTTATAACTGGGAAGCGGGCGTAAAAACCACGGGCGCAAAAATTCAAAATACCAGTGT TATTGATACCAATGTCGGCAGCCATAAACTAATCGCCGGTGTTGAGCACTATAAAAAAGAATCTGAGCTAGAGCGTGACT TCGTTAAAAAGGGCACCGATGAAGCCAAGAATACCTCTATTTATCTAGAAGATCAGTGGAAAAATGGCAAATTAACCTTA ACGCCGGGCATACGCTACGACCGTTATGAGTCGCCTGAATTTGTTGCTGGTGGCAAAACTTATGACAATGTCGTTGGTGC GCTTGCAGCAAGCTATGAGATTGCACCGTTAACGCAAGTGTTTGCCAGTTATACGCAGTTATTTAACGGTCCTGATTTGA GCCAAGCGATTTTTAACTCAGATGGCGACAAAACCTACGTCAATAAAGACTTAAAAGCAGAAGAAGGATCAAATGCTGAG ATTGGTATCGTTAAAACATTGCGTGACCTAACGGTAGCGGGTGATGCGTTACAACTTAGCGGAAAATATTTTGAAACTGA TATCGAAAACTTTATTGAATTTGTCCGTTCTGGTGGTACTCGCGTTGGCTTAGACTGTACCACTGGACAACTTGGTGGCG CTTGCCAAGGCGCGGTCAATAAAGATGAAGATTATAAAATTAAGGGTGTTGAGCTCGCTGCTGACTATAAAATGGATAGT TTTAGCATGGGTCTAAGCTATGCCCATGCACGTAGCAAAGGTGATAAAACGGGCTATAGCATCCCATCAGTAACGGGTGG CAGTGCCGACTCTGGCGATAAATATATGGTGAACTTGGCCTACGTACCAACAGACACCACCGAGCTGGGCTGGCGCAGTA CCTATGTGGCTGCCATCACGCCCAAAACTGAATCTGCCCAGCTTGAAAAGTCTAACTATGATGTGCATGATATTTTTATG AGCTATATGCCAAAACAAGTCGATGGTTTAAAAGCGACTGTTGGGGTTTATAATATCTTTGATGAAACCTATGCCAGCCA TGCGTCACGTTCGCTTACAGAACAAGCAGATGGTTTGCGCACCGACTTTGAACCCGGTCGCAATATCAAAGCATCTTTAA CCTATCAGTTCTAA
Upstream 100 bases:
>100_bases AGCATCAAGCTTTTTAGAAAGTAATTTTGGGCAAAAATTACTGATTATTGATTTCCTAAACGAGTTTTAAAATTCTTATA CTAGATAAAGTGAGTATGTT
Downstream 100 bases:
>100_bases ATTTATACTGATCATGCGTAAAAAATGAGTGTTAAAAAAGCCAGCTGCTTTGTATAAGAGCTGGCTTTTTTATGTCGAAA CCTCTTTTTTAAACCATATG
Product: TonB-dependent heme/hemoglobin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 697; Mature: 697
Protein sequence:
>697_residues MREVKLSRFSSRLTVLSMGVAAVLGAQAASATTSADMPSTTLQTITVTANSSVRESVQEGGVDVEGYTPAAQASHLSDFL NVVPGVTVGGTSAVNQRIRVRGLDDTNLKVTIDGARQEGTLFYHMGDVTIDPDLLKQAEVSVGNNSVTLGNDALGGAVAF KTVDAADLLKPGQKIGAKLHAGYASNNDELLTSATVFAAPTDNIDLLAYYGQRNANAGEDGEGRKIQTEDSKGENILLKA GAYIANDHHVGASFSRTENEGMFPLRPDFPASPGVGSWNEILPQKVKRDTYGLDYSYNPASNLVNVDTNVYQTETQISRD TDYTTKPGYNWEAGVKTTGAKIQNTSVIDTNVGSHKLIAGVEHYKKESELERDFVKKGTDEAKNTSIYLEDQWKNGKLTL TPGIRYDRYESPEFVAGGKTYDNVVGALAASYEIAPLTQVFASYTQLFNGPDLSQAIFNSDGDKTYVNKDLKAEEGSNAE IGIVKTLRDLTVAGDALQLSGKYFETDIENFIEFVRSGGTRVGLDCTTGQLGGACQGAVNKDEDYKIKGVELAADYKMDS FSMGLSYAHARSKGDKTGYSIPSVTGGSADSGDKYMVNLAYVPTDTTELGWRSTYVAAITPKTESAQLEKSNYDVHDIFM SYMPKQVDGLKATVGVYNIFDETYASHASRSLTEQADGLRTDFEPGRNIKASLTYQF
Sequences:
>Translated_697_residues MREVKLSRFSSRLTVLSMGVAAVLGAQAASATTSADMPSTTLQTITVTANSSVRESVQEGGVDVEGYTPAAQASHLSDFL NVVPGVTVGGTSAVNQRIRVRGLDDTNLKVTIDGARQEGTLFYHMGDVTIDPDLLKQAEVSVGNNSVTLGNDALGGAVAF KTVDAADLLKPGQKIGAKLHAGYASNNDELLTSATVFAAPTDNIDLLAYYGQRNANAGEDGEGRKIQTEDSKGENILLKA GAYIANDHHVGASFSRTENEGMFPLRPDFPASPGVGSWNEILPQKVKRDTYGLDYSYNPASNLVNVDTNVYQTETQISRD TDYTTKPGYNWEAGVKTTGAKIQNTSVIDTNVGSHKLIAGVEHYKKESELERDFVKKGTDEAKNTSIYLEDQWKNGKLTL TPGIRYDRYESPEFVAGGKTYDNVVGALAASYEIAPLTQVFASYTQLFNGPDLSQAIFNSDGDKTYVNKDLKAEEGSNAE IGIVKTLRDLTVAGDALQLSGKYFETDIENFIEFVRSGGTRVGLDCTTGQLGGACQGAVNKDEDYKIKGVELAADYKMDS FSMGLSYAHARSKGDKTGYSIPSVTGGSADSGDKYMVNLAYVPTDTTELGWRSTYVAAITPKTESAQLEKSNYDVHDIFM SYMPKQVDGLKATVGVYNIFDETYASHASRSLTEQADGLRTDFEPGRNIKASLTYQF >Mature_697_residues MREVKLSRFSSRLTVLSMGVAAVLGAQAASATTSADMPSTTLQTITVTANSSVRESVQEGGVDVEGYTPAAQASHLSDFL NVVPGVTVGGTSAVNQRIRVRGLDDTNLKVTIDGARQEGTLFYHMGDVTIDPDLLKQAEVSVGNNSVTLGNDALGGAVAF KTVDAADLLKPGQKIGAKLHAGYASNNDELLTSATVFAAPTDNIDLLAYYGQRNANAGEDGEGRKIQTEDSKGENILLKA GAYIANDHHVGASFSRTENEGMFPLRPDFPASPGVGSWNEILPQKVKRDTYGLDYSYNPASNLVNVDTNVYQTETQISRD TDYTTKPGYNWEAGVKTTGAKIQNTSVIDTNVGSHKLIAGVEHYKKESELERDFVKKGTDEAKNTSIYLEDQWKNGKLTL TPGIRYDRYESPEFVAGGKTYDNVVGALAASYEIAPLTQVFASYTQLFNGPDLSQAIFNSDGDKTYVNKDLKAEEGSNAE IGIVKTLRDLTVAGDALQLSGKYFETDIENFIEFVRSGGTRVGLDCTTGQLGGACQGAVNKDEDYKIKGVELAADYKMDS FSMGLSYAHARSKGDKTGYSIPSVTGGSADSGDKYMVNLAYVPTDTTELGWRSTYVAAITPKTESAQLEKSNYDVHDIFM SYMPKQVDGLKATVGVYNIFDETYASHASRSLTEQADGLRTDFEPGRNIKASLTYQF
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 75130; Mature: 75130
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREVKLSRFSSRLTVLSMGVAAVLGAQAASATTSADMPSTTLQTITVTANSSVRESVQEG CCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHC GVDVEGYTPAAQASHLSDFLNVVPGVTVGGTSAVNQRIRVRGLDDTNLKVTIDGARQEGT CCEECCCCCHHHHHHHHHHHHHHCCCEECCHHHHCCEEEEEECCCCCEEEEEECCCCCCE LFYHMGDVTIDPDLLKQAEVSVGNNSVTLGNDALGGAVAFKTVDAADLLKPGQKIGAKLH EEEEECCEEECHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHCCCHHHCCEEE AGYASNNDELLTSATVFAAPTDNIDLLAYYGQRNANAGEDGEGRKIQTEDSKGENILLKA ECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEC GAYIANDHHVGASFSRTENEGMFPLRPDFPASPGVGSWNEILPQKVKRDTYGLDYSYNPA CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC SNLVNVDTNVYQTETQISRDTDYTTKPGYNWEAGVKTTGAKIQNTSVIDTNVGSHKLIAG CCEEECCCCEEECHHHHCCCCCCCCCCCCCCCCCCEECCCEEECCEEEECCCCCCHHHHH VEHYKKESELERDFVKKGTDEAKNTSIYLEDQWKNGKLTLTPGIRYDRYESPEFVAGGKT HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCH YDNVVGALAASYEIAPLTQVFASYTQLFNGPDLSQAIFNSDGDKTYVNKDLKAEEGSNAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCE IGIVKTLRDLTVAGDALQLSGKYFETDIENFIEFVRSGGTRVGLDCTTGQLGGACQGAVN EEHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC KDEDYKIKGVELAADYKMDSFSMGLSYAHARSKGDKTGYSIPSVTGGSADSGDKYMVNLA CCCCEEEEEEEEEECCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEE YVPTDTTELGWRSTYVAAITPKTESAQLEKSNYDVHDIFMSYMPKQVDGLKATVGVYNIF EECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCHHCCCEEEHHHHHHH DETYASHASRSLTEQADGLRTDFEPGRNIKASLTYQF HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MREVKLSRFSSRLTVLSMGVAAVLGAQAASATTSADMPSTTLQTITVTANSSVRESVQEG CCCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHC GVDVEGYTPAAQASHLSDFLNVVPGVTVGGTSAVNQRIRVRGLDDTNLKVTIDGARQEGT CCEECCCCCHHHHHHHHHHHHHHCCCEECCHHHHCCEEEEEECCCCCEEEEEECCCCCCE LFYHMGDVTIDPDLLKQAEVSVGNNSVTLGNDALGGAVAFKTVDAADLLKPGQKIGAKLH EEEEECCEEECHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHCCCHHHCCEEE AGYASNNDELLTSATVFAAPTDNIDLLAYYGQRNANAGEDGEGRKIQTEDSKGENILLKA ECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEEEEEC GAYIANDHHVGASFSRTENEGMFPLRPDFPASPGVGSWNEILPQKVKRDTYGLDYSYNPA CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC SNLVNVDTNVYQTETQISRDTDYTTKPGYNWEAGVKTTGAKIQNTSVIDTNVGSHKLIAG CCEEECCCCEEECHHHHCCCCCCCCCCCCCCCCCCEECCCEEECCEEEECCCCCCHHHHH VEHYKKESELERDFVKKGTDEAKNTSIYLEDQWKNGKLTLTPGIRYDRYESPEFVAGGKT HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCH YDNVVGALAASYEIAPLTQVFASYTQLFNGPDLSQAIFNSDGDKTYVNKDLKAEEGSNAE HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCE IGIVKTLRDLTVAGDALQLSGKYFETDIENFIEFVRSGGTRVGLDCTTGQLGGACQGAVN EEHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC KDEDYKIKGVELAADYKMDSFSMGLSYAHARSKGDKTGYSIPSVTGGSADSGDKYMVNLA CCCCEEEEEEEEEECCCCCHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEE YVPTDTTELGWRSTYVAAITPKTESAQLEKSNYDVHDIFMSYMPKQVDGLKATVGVYNIF EECCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCHHCCCEEEHHHHHHH DETYASHASRSLTEQADGLRTDFEPGRNIKASLTYQF HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1425573 [H]