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The map label for this gene is yvoA [H]

Identifier: 93006647

GI number: 93006647

Start: 2250987

End: 2251712

Strand: Reverse

Name: yvoA [H]

Synonym: Pcryo_1823

Alternate gene names: 93006647

Gene position: 2251712-2250987 (Counterclockwise)

Preceding gene: 93006657

Following gene: 93006645

Centisome position: 73.59

GC content: 38.57

Gene sequence:

>726_bases
ATGCTAAATAATTTCAAAGAATTTAAGATGCCACGTTATGAGCAAGTGCGATGGCATATACAGACGTTACTGACAGAGAG
TAAGTGGGATGAAAACACGCCCTTACCGACGGAGCAGGAGTTTGCAGATAAGTATGAAGTATCTGTAGGAACCGTCCGTA
AAGCGGTCGAAAAATTGGTAGAAGATGGGGTGTTAATAAAGCAGCAAGGCAAAGGCACCTTCTTAAAACGTCCAGATTTT
GCAAGCTCACTATTAAGGTTTTTTAAGTTTCGTGATAAAGATGCTCGCTATGTCACGCCGACGGGCATAATTAAAAAAAT
CATAGTTATAGACGGTATTGATGACATTAATAAAAAACTAAATATAGGTAAAAACAAAGCGCTCATTTATATAGAGCGTA
CGCGTATGGTTGAAGACAGAGTCTTGTTAAGTGAAAAAATTTGGTTACCTAAGAGTCGCTTCCAAGCTTTTGCAACCTTA
AATCCTGAAGATTTCGAGAATCTTCTCTATCCTTTTTACTATACCAAGTGTGGTCAATTTGTGTCGTCTGCTGTAGAGAC
GCTGTATTTTATAACCGATCACAGCGACGATTATTTGGGCAATACTAAGCAAGAAAACTTAGTTAAGGTATGCCGCATTG
CGAAGAATCTAGAAGGTGATCCTATCGAATATAGAGAGTCCTATGGGCTGGCAGAGAAGTTCAGCTATGAGATTAATATT
ATTTAG

Upstream 100 bases:

>100_bases
CTTAAGAGAAGTTGATCAGGGATAACGTAGTTTTACAGCAATAGCAGTGCTTGACGAGATTGAAACAGTTAATAAAAACC
TTTCCACTGTGGTGAAAAAA

Downstream 100 bases:

>100_bases
GCGTTTATTAAACCTATATTGATAATTAAGTAACCGTTTGAGATAAACACATTAAAAGACAGTACCTTTAGGAAATACTA
AAAGTACTGTCTTTTTTGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLNNFKEFKMPRYEQVRWHIQTLLTESKWDENTPLPTEQEFADKYEVSVGTVRKAVEKLVEDGVLIKQQGKGTFLKRPDF
ASSLLRFFKFRDKDARYVTPTGIIKKIIVIDGIDDINKKLNIGKNKALIYIERTRMVEDRVLLSEKIWLPKSRFQAFATL
NPEDFENLLYPFYYTKCGQFVSSAVETLYFITDHSDDYLGNTKQENLVKVCRIAKNLEGDPIEYRESYGLAEKFSYEINI
I

Sequences:

>Translated_241_residues
MLNNFKEFKMPRYEQVRWHIQTLLTESKWDENTPLPTEQEFADKYEVSVGTVRKAVEKLVEDGVLIKQQGKGTFLKRPDF
ASSLLRFFKFRDKDARYVTPTGIIKKIIVIDGIDDINKKLNIGKNKALIYIERTRMVEDRVLLSEKIWLPKSRFQAFATL
NPEDFENLLYPFYYTKCGQFVSSAVETLYFITDHSDDYLGNTKQENLVKVCRIAKNLEGDPIEYRESYGLAEKFSYEINI
I
>Mature_241_residues
MLNNFKEFKMPRYEQVRWHIQTLLTESKWDENTPLPTEQEFADKYEVSVGTVRKAVEKLVEDGVLIKQQGKGTFLKRPDF
ASSLLRFFKFRDKDARYVTPTGIIKKIIVIDGIDDINKKLNIGKNKALIYIERTRMVEDRVLLSEKIWLPKSRFQAFATL
NPEDFENLLYPFYYTKCGQFVSSAVETLYFITDHSDDYLGNTKQENLVKVCRIAKNLEGDPIEYRESYGLAEKFSYEINI
I

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790118, Length=179, Percent_Identity=25.6983240223464, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28268; Mature: 28268

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNFKEFKMPRYEQVRWHIQTLLTESKWDENTPLPTEQEFADKYEVSVGTVRKAVEKLV
CCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EDGVLIKQQGKGTFLKRPDFASSLLRFFKFRDKDARYVTPTGIIKKIIVIDGIDDINKKL
HCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCHHHHHHH
NIGKNKALIYIERTRMVEDRVLLSEKIWLPKSRFQAFATLNPEDFENLLYPFYYTKCGQF
CCCCCCEEEEEEHHHHHHHHHHHHHHCCCCHHHHHEEECCCHHHHHHHHHHHHHHHHHHH
VSSAVETLYFITDHSDDYLGNTKQENLVKVCRIAKNLEGDPIEYRESYGLAEKFSYEINI
HHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCEEEEC
I
C
>Mature Secondary Structure
MLNNFKEFKMPRYEQVRWHIQTLLTESKWDENTPLPTEQEFADKYEVSVGTVRKAVEKLV
CCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EDGVLIKQQGKGTFLKRPDFASSLLRFFKFRDKDARYVTPTGIIKKIIVIDGIDDINKKL
HCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCHHHHHHH
NIGKNKALIYIERTRMVEDRVLLSEKIWLPKSRFQAFATLNPEDFENLLYPFYYTKCGQF
CCCCCCEEEEEEHHHHHHHHHHHHHHCCCCHHHHHEEECCCHHHHHHHHHHHHHHHHHHH
VSSAVETLYFITDHSDDYLGNTKQENLVKVCRIAKNLEGDPIEYRESYGLAEKFSYEINI
HHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCEEEEC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]