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The map label for this gene is ccmF [H]

Identifier: 93006567

GI number: 93006567

Start: 2156541

End: 2158586

Strand: Reverse

Name: ccmF [H]

Synonym: Pcryo_1743

Alternate gene names: 93006567

Gene position: 2158586-2156541 (Counterclockwise)

Preceding gene: 93006568

Following gene: 93006566

Centisome position: 70.54

GC content: 47.21

Gene sequence:

>2046_bases
ATGTTAATCACAGAATTGGGTTATTTTGCCGTGCTAGCCGCCTTTATGTTGGCGATTTTGCAGGTAGTATTACCAACGAT
AGGCGTTATGCGTGACCATGTTGCTTGGCAGCGTTTGGCACCGAGCTTGGCATGGGCGCAGTTTGCCGCCATGATTACCT
CGTTTGGCGCATTGATGGCAGGCTTTTATTTTAATGACTTTAGCCTTGTCTATGTGTCGCAGCACTCGAATACTTTGCTG
CCTTGGTATTATAAGTTATCAGCGACGTGGGGCGGGCATGAAGGCTCGCTGCTACTATGGATGACTATTATGGCAACGTG
GTGTGCCTTGGTCTCATACTTTAGTCGTGGTTTGCCATTGTCGATGCGGGCGCGTGTATTGGTGATATTAGCCGCTGTAC
AGATGATGATGCTGGCAATGCTCATCTTTACCTCGTCACCGTTTGACCGCACTTTGCCAAACCTGCCCGTTGATGGTGCT
GACTTAAACCCTGTCTTACAGGATTTTGGTTTAATTATCCATCCACCGATGCTGTATATGGGCTATGTCGGTATGGTAGT
GCCGTTTGCGTTTTGTATGGCAGCACTGTGGGAAGGTCGCTTAGATGCGGTATGGACACGCTGGTCACGTCCATGGGCAT
TGGCTGCTTGGGGCTTTTTAACGATTGGTATTGCACTGGGTTCGTGGTGGGCTTATTACGAGCTTGGTTGGGGCGGTTGG
TGGTTTTGGGATCCAGTAGAAAACGCTTCGCTATTGCCTTGGTTGGCAGGTTTGGCATTGCTCCATTCACTGGCAGTCAC
TGAAAAGCGCGGTGTTTTTAAAGCGTGGACGATTATGCTGGCCATTTTTGCTTTTGCCTTAAGCTTACTTGGGACATTCT
TAGTTCGCTCTGGGGTTATTACCTCAGTACATTCATTTGCCGCTGATCCCACACGTGGTTTAGTGATTTTAGCAATTCTT
GGCATTATTGTGGGCGGTGGTCTCTTGATGTTCGCTGTACGTGGCTGGCGTCTCACGATTGAAAGTCAATATCAGCTGAT
TTCACGTGAGTCGTTTTTAGTCATTAACAACGTCATCATATTGATTGCGACCTTAGTCGTATTACTTGGTACGCTCTATC
CTATCATTGCTGATGCCTTTAATTTAGGTCAGGTATCCGTAGGTCCTCCGTACTTTAATGCGCTGTTTGTGCCATTGACT
TGGCTATTAATGATAGCAATGGGCATGGGTTCCAATATCCGCTGGAAACAAGACAGTCGCCCGCTCTTAGGCGCTGGCAT
GGTCATTGCGGCAAGTAGCCTTGTTTTAGCAGCAGTCATTACCTATTTTGTTAGCCCATCTGCCATGCTCAATATTGGTG
TGACGCTAGCAGTAAGTTTTTGGGTATTGTTATGGATGGTGGTCGATTTTAAAGACAAAACCAAAAATGCCCCAAGCTTA
TTCAAGGGCTTAGCTAAGCTCCGCTTGAGTTACTGGGGTCAGCAGACCGCTCATATCGGCGTTATTATAGCGGTCATCGG
TGTTGCGTTTACCAGTACCTTAAGCATCGAGCGCGATGTGGCACTAAGGATTGGTGAAACGGTTAATGTCCAAGGTTATG
ACTTTGCATTAACCGATTTAAGAGAGACGAGAGGCAGTAACTTTGACGCAACGCAAGCTGAGGTCACAGTCACTAAGAAG
GGCAAGGCAGTAACGATACTTCATCCTGAAAAACGGACTTATATCATCAGTACGATGCCGACGACTGAGGCGGCAATTAA
TGCCAACCTCATGCGTGACTTGTATGTCGCACTTGGTGAACCTATCGCTGAGGGTAGCAATCAATGGGCAGTACGTATTT
ATGTGAAGCCATTGATTCGCTGGATATGGCTCGGCGCTATTATTATGGCATTAGGTGGTCTATTGAGTATGCTTGATAGG
CGCTATCGTCTCAAAACAACTAAGACGCCCGCTCAAATTACAGCAAGCAAGTCAGGTTTCGCGACCGTTGCTGACTTAGA
TGGCAACAATGCGACAGATGCCACGGCAACAATAGGGGAGAAATAA

Upstream 100 bases:

>100_bases
AACTACAAGCAGTAACAAGTATTGGATACTTTCGATTATCCTGCAATACCAATCCCTAAAATAAACAATGACCGTATTAA
GGTAAACAAGGTTAGACCGT

Downstream 100 bases:

>100_bases
GATGACCCAATCAGAGGAGTCTCCTCAAAAAGGTACTGATAAAAAAGGCAATCAAACGATGAAAAAAAGCCAAATCAGAA
TATGGTTTTTGATTCCGTTG

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MLITELGYFAVLAAFMLAILQVVLPTIGVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAAVQMMMLAMLIFTSSPFDRTLPNLPVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASLLPWLAGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLVILAIL
GIIVGGGLLMFAVRGWRLTIESQYQLISRESFLVINNVIILIATLVVLLGTLYPIIADAFNLGQVSVGPPYFNALFVPLT
WLLMIAMGMGSNIRWKQDSRPLLGAGMVIAASSLVLAAVITYFVSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSL
FKGLAKLRLSYWGQQTAHIGVIIAVIGVAFTSTLSIERDVALRIGETVNVQGYDFALTDLRETRGSNFDATQAEVTVTKK
GKAVTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGEPIAEGSNQWAVRIYVKPLIRWIWLGAIIMALGGLLSMLDR
RYRLKTTKTPAQITASKSGFATVADLDGNNATDATATIGEK

Sequences:

>Translated_681_residues
MLITELGYFAVLAAFMLAILQVVLPTIGVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAAVQMMMLAMLIFTSSPFDRTLPNLPVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASLLPWLAGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLVILAIL
GIIVGGGLLMFAVRGWRLTIESQYQLISRESFLVINNVIILIATLVVLLGTLYPIIADAFNLGQVSVGPPYFNALFVPLT
WLLMIAMGMGSNIRWKQDSRPLLGAGMVIAASSLVLAAVITYFVSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSL
FKGLAKLRLSYWGQQTAHIGVIIAVIGVAFTSTLSIERDVALRIGETVNVQGYDFALTDLRETRGSNFDATQAEVTVTKK
GKAVTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGEPIAEGSNQWAVRIYVKPLIRWIWLGAIIMALGGLLSMLDR
RYRLKTTKTPAQITASKSGFATVADLDGNNATDATATIGEK
>Mature_681_residues
MLITELGYFAVLAAFMLAILQVVLPTIGVMRDHVAWQRLAPSLAWAQFAAMITSFGALMAGFYFNDFSLVYVSQHSNTLL
PWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPLSMRARVLVILAAVQMMMLAMLIFTSSPFDRTLPNLPVDGA
DLNPVLQDFGLIIHPPMLYMGYVGMVVPFAFCMAALWEGRLDAVWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
WFWDPVENASLLPWLAGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVITSVHSFAADPTRGLVILAIL
GIIVGGGLLMFAVRGWRLTIESQYQLISRESFLVINNVIILIATLVVLLGTLYPIIADAFNLGQVSVGPPYFNALFVPLT
WLLMIAMGMGSNIRWKQDSRPLLGAGMVIAASSLVLAAVITYFVSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSL
FKGLAKLRLSYWGQQTAHIGVIIAVIGVAFTSTLSIERDVALRIGETVNVQGYDFALTDLRETRGSNFDATQAEVTVTKK
GKAVTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGEPIAEGSNQWAVRIYVKPLIRWIWLGAIIMALGGLLSMLDR
RYRLKTTKTPAQITASKSGFATVADLDGNNATDATATIGEK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=661, Percent_Identity=46.2934947049924, Blast_Score=573, Evalue=1e-164,
Organism=Escherichia coli, GI1790511, Length=407, Percent_Identity=42.5061425061425, Blast_Score=288, Evalue=8e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 74943; Mature: 74943

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITELGYFAVLAAFMLAILQVVLPTIGVMRDHVAWQRLAPSLAWAQFAAMITSFGALMA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GFYFNDFSLVYVSQHSNTLLPWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPL
HHEECCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
SMRARVLVILAAVQMMMLAMLIFTSSPFDRTLPNLPVDGADLNPVLQDFGLIIHPPMLYM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
GYVGMVVPFAFCMAALWEGRLDAVWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHEEEEECCCCE
WFWDPVENASLLPWLAGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVI
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLVILAILGIIVGGGLLMFAVRGWRLTIESQYQLISRESFLVINNVII
HHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHH
LIATLVVLLGTLYPIIADAFNLGQVSVGPPYFNALFVPLTWLLMIAMGMGSNIRWKQDSR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC
PLLGAGMVIAASSLVLAAVITYFVSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSL
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FKGLAKLRLSYWGQQTAHIGVIIAVIGVAFTSTLSIERDVALRIGETVNVQGYDFALTDL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCEEECCCCCCHHHHH
RETRGSNFDATQAEVTVTKKGKAVTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGE
HHHCCCCCCCCCEEEEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
PIAEGSNQWAVRIYVKPLIRWIWLGAIIMALGGLLSMLDRRYRLKTTKTPAQITASKSGF
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
ATVADLDGNNATDATATIGEK
EEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLITELGYFAVLAAFMLAILQVVLPTIGVMRDHVAWQRLAPSLAWAQFAAMITSFGALMA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
GFYFNDFSLVYVSQHSNTLLPWYYKLSATWGGHEGSLLLWMTIMATWCALVSYFSRGLPL
HHEECCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
SMRARVLVILAAVQMMMLAMLIFTSSPFDRTLPNLPVDGADLNPVLQDFGLIIHPPMLYM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHH
GYVGMVVPFAFCMAALWEGRLDAVWTRWSRPWALAAWGFLTIGIALGSWWAYYELGWGGW
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHEEEEECCCCE
WFWDPVENASLLPWLAGLALLHSLAVTEKRGVFKAWTIMLAIFAFALSLLGTFLVRSGVI
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSVHSFAADPTRGLVILAILGIIVGGGLLMFAVRGWRLTIESQYQLISRESFLVINNVII
HHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCEEEEEHHHHHHCCCCHHHHHHHHH
LIATLVVLLGTLYPIIADAFNLGQVSVGPPYFNALFVPLTWLLMIAMGMGSNIRWKQDSR
HHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC
PLLGAGMVIAASSLVLAAVITYFVSPSAMLNIGVTLAVSFWVLLWMVVDFKDKTKNAPSL
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
FKGLAKLRLSYWGQQTAHIGVIIAVIGVAFTSTLSIERDVALRIGETVNVQGYDFALTDL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEECCEEECCCCCCHHHHH
RETRGSNFDATQAEVTVTKKGKAVTILHPEKRTYIISTMPTTEAAINANLMRDLYVALGE
HHHCCCCCCCCCEEEEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
PIAEGSNQWAVRIYVKPLIRWIWLGAIIMALGGLLSMLDRRYRLKTTKTPAQITASKSGF
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
ATVADLDGNNATDATATIGEK
EEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA