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The map label for this gene is orn [H]

Identifier: 93006558

GI number: 93006558

Start: 2149178

End: 2149765

Strand: Reverse

Name: orn [H]

Synonym: Pcryo_1734

Alternate gene names: 93006558

Gene position: 2149765-2149178 (Counterclockwise)

Preceding gene: 93006563

Following gene: 93006556

Centisome position: 70.26

GC content: 43.54

Gene sequence:

>588_bases
ATGACCACCGGCGACCATCCCAATAAAATTAAAATCAGAAACCAAGGCAAAAAAGGGCTGGTATGGATTGATTTAGAAAT
GACCGGTCTTGATACTCTAAATGATGAGATTATCGAGATAGCGACTGTTGTCACCGATGAAGATTTGAATGTCCTTGCCG
AAGGACCTGTCTTTGCGATCAAAGTATCAGATCAAAAGTTAAATGGTATGGATGACTGGAATACCAAGCAGCATGGGCAA
TCAGGGTTGGTTGACCGTGTACGCCGTAGTACGGTGACATTGGCTGAGGCGGAAGCTGAAACCATTAAATTTTTGAATAA
ATGGGTCGATAGTGGTAAGTCGCCAATGTGTGGCAATTCAATCTGCCAAGATCGCCGCTTTATGGCGCGTCAAATGCCTG
AGCTAGAGCGGTTCTTTCATTATCGAAACCTTGATGTGTCGTCTATTAAAGAGCTTTGCTTCCGCTGGCGCCCTGATGTC
CTCAAGAATTTTGAGAAAGGCGGCAGTCATTTAGCGTTAGATGATATTCGTGACTCAATTCGTGAGCTTAAGCACTATCG
TCAGCATTTCTTTAAACTGATACCTTAA

Upstream 100 bases:

>100_bases
TTTGCACTGAGATAGTTAGATAGGCGCATTATTTTATTCACATTGCTATTAAAGCATTGCTTGTAAGTTGTCTCAAACTT
TATTGACCATAGGATATTTT

Downstream 100 bases:

>100_bases
AATCGGCACCTTAGAAAAAAAGCTATCAAGAAAGCCTTCAGATGAATCAAGCGCTACGATTGGGCTAATTTGTTTGAAGG
CTTTTTTGTATTAAATAATC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTTGDHPNKIKIRNQGKKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTKQHGQ
SGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELERFFHYRNLDVSSIKELCFRWRPDV
LKNFEKGGSHLALDDIRDSIRELKHYRQHFFKLIP

Sequences:

>Translated_195_residues
MTTGDHPNKIKIRNQGKKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTKQHGQ
SGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELERFFHYRNLDVSSIKELCFRWRPDV
LKNFEKGGSHLALDDIRDSIRELKHYRQHFFKLIP
>Mature_194_residues
TTGDHPNKIKIRNQGKKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSDQKLNGMDDWNTKQHGQS
GLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNSICQDRRFMARQMPELERFFHYRNLDVSSIKELCFRWRPDVL
KNFEKGGSHLALDDIRDSIRELKHYRQHFFKLIP

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=179, Evalue=2e-45,
Organism=Escherichia coli, GI87082382, Length=180, Percent_Identity=58.8888888888889, Blast_Score=233, Evalue=8e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=44.7674418604651, Blast_Score=153, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6323088, Length=189, Percent_Identity=37.5661375661376, Blast_Score=121, Evalue=8e-29,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=45.4022988505747, Blast_Score=166, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22531; Mature: 22400

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGDHPNKIKIRNQGKKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAI
CCCCCCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEE
KVSDQKLNGMDDWNTKQHGQSGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNS
EECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ICQDRRFMARQMPELERFFHYRNLDVSSIKELCFRWRPDVLKNFEKGGSHLALDDIRDSI
HHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHH
RELKHYRQHFFKLIP
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTGDHPNKIKIRNQGKKGLVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAI
CCCCCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEE
KVSDQKLNGMDDWNTKQHGQSGLVDRVRRSTVTLAEAEAETIKFLNKWVDSGKSPMCGNS
EECCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ICQDRRFMARQMPELERFFHYRNLDVSSIKELCFRWRPDVLKNFEKGGSHLALDDIRDSI
HHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHH
RELKHYRQHFFKLIP
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA