Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 93006547

GI number: 93006547

Start: 2132040

End: 2133110

Strand: Reverse

Name: rarD [C]

Synonym: Pcryo_1723

Alternate gene names: 93006547

Gene position: 2133110-2132040 (Counterclockwise)

Preceding gene: 93006548

Following gene: 93006546

Centisome position: 69.71

GC content: 43.23

Gene sequence:

>1071_bases
ATGCTTACGACCAATCAGACCGTTCAGGGAACTTTGGCTTCAGTATCATCAAGTTTTTTGTTTTCTTTGATGTTTCTATT
TGGGCTATTTATGCTGCCATTAACGGGTACGCAGGTGGCTTCGTGGCGTGTATTGATGATGCTCCTGAGCCTAGTGCTAT
TGGTCAGTCTTACAAAACAGTGGCAGCATGTATTTGATTATCTCAAAACACTAAAGACGCCAAAAGAGTGGATTATTTTT
GTACTGCCAACCCCAATTTTAGGTGGGCAGATTTGGCTGTTTATGTGGGGACCGGTCAATGGCTTTGGTCTTGATGTGAC
CTTGGGCTATTTTTTATTGCCGTTGGTCATGATTGTGATTGGGCGTTTTTTCTATCATGAGCATATGAGTGTTTTGCAAT
GGTTAGCAGCGATATGTGCTGCGCTCGGTATCGGCTATGATATATTGCAATATGGCAGTATATCTTGGGTAACCGCATTT
GCATGCTTGGGTTATCCGCCTTATTATTTGCTACGTCGTAAGCTTGCTGTGCCGCCTATTACAGGTCTGTTATCAGATTT
GACGTTACTGACGCCAGTGGTGCTAATTATGCTTTATAGCAGCGGCGGCTTTAGTGTAGCGGCGCAAAATACCAAATTTT
GGTACATATTGCCCCTGCTAGGCGCTTTTAGTGCGCTTGCCATGTCTCTAACTATGGTTGCTAGTAGTAAGCTGCCAGTG
TCGTTATTTGGAGCGCTCAGCTACATAGAGCCTATGCTGCTATTTGTATTATCTATTACTGTGTTAAATCAAAGTCTGGA
TGAAGGAGGCTCGTTATTCATGTATGGCATGATTACACTGGCATTGTTTATTATGATTGCTGATAGTATGAAAGGCTTTC
TTATCCGACGCCGTGACAATCATTTGCATGGTTACCGAGAGCCACAAGTTGGGAGTTTCCCACCACGCCGCCGTTTTATC
GACCATCGTATAGAAGGGGTATTAAAGGCGCACCGTTTTCGTAAAATCAGGAAATACCAACAGCGAATAGATAAAATCAC
GCGTAAAATCCAAGCGTTAGATTCAAAGTAG

Upstream 100 bases:

>100_bases
GTTAGCTTTTTGGTCTATTCTTTTATTACCTTTTATAAAAAAAGCCTCTGACGTTATCGTTGGAGGCTTTGTTTTTTTTC
TGTTTTTTAAGGCTGTTGTT

Downstream 100 bases:

>100_bases
TTATTGATGTAATGATAAGTAGTGTGGCCCGATAAAAGCGGTTTGATAAGTCAAGCTACATAGTAAAGCTATAATAAAAA
CAATAAGTGAGTTATTATCA

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MLTTNQTVQGTLASVSSSFLFSLMFLFGLFMLPLTGTQVASWRVLMMLLSLVLLVSLTKQWQHVFDYLKTLKTPKEWIIF
VLPTPILGGQIWLFMWGPVNGFGLDVTLGYFLLPLVMIVIGRFFYHEHMSVLQWLAAICAALGIGYDILQYGSISWVTAF
ACLGYPPYYLLRRKLAVPPITGLLSDLTLLTPVVLIMLYSSGGFSVAAQNTKFWYILPLLGAFSALAMSLTMVASSKLPV
SLFGALSYIEPMLLFVLSITVLNQSLDEGGSLFMYGMITLALFIMIADSMKGFLIRRRDNHLHGYREPQVGSFPPRRRFI
DHRIEGVLKAHRFRKIRKYQQRIDKITRKIQALDSK

Sequences:

>Translated_356_residues
MLTTNQTVQGTLASVSSSFLFSLMFLFGLFMLPLTGTQVASWRVLMMLLSLVLLVSLTKQWQHVFDYLKTLKTPKEWIIF
VLPTPILGGQIWLFMWGPVNGFGLDVTLGYFLLPLVMIVIGRFFYHEHMSVLQWLAAICAALGIGYDILQYGSISWVTAF
ACLGYPPYYLLRRKLAVPPITGLLSDLTLLTPVVLIMLYSSGGFSVAAQNTKFWYILPLLGAFSALAMSLTMVASSKLPV
SLFGALSYIEPMLLFVLSITVLNQSLDEGGSLFMYGMITLALFIMIADSMKGFLIRRRDNHLHGYREPQVGSFPPRRRFI
DHRIEGVLKAHRFRKIRKYQQRIDKITRKIQALDSK
>Mature_356_residues
MLTTNQTVQGTLASVSSSFLFSLMFLFGLFMLPLTGTQVASWRVLMMLLSLVLLVSLTKQWQHVFDYLKTLKTPKEWIIF
VLPTPILGGQIWLFMWGPVNGFGLDVTLGYFLLPLVMIVIGRFFYHEHMSVLQWLAAICAALGIGYDILQYGSISWVTAF
ACLGYPPYYLLRRKLAVPPITGLLSDLTLLTPVVLIMLYSSGGFSVAAQNTKFWYILPLLGAFSALAMSLTMVASSKLPV
SLFGALSYIEPMLLFVLSITVLNQSLDEGGSLFMYGMITLALFIMIADSMKGFLIRRRDNHLHGYREPQVGSFPPRRRFI
DHRIEGVLKAHRFRKIRKYQQRIDKITRKIQALDSK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=28.3276450511945, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 40257; Mature: 40257

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTNQTVQGTLASVSSSFLFSLMFLFGLFMLPLTGTQVASWRVLMMLLSLVLLVSLTKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WQHVFDYLKTLKTPKEWIIFVLPTPILGGQIWLFMWGPVNGFGLDVTLGYFLLPLVMIVI
HHHHHHHHHHHCCCHHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
GRFFYHEHMSVLQWLAAICAALGIGYDILQYGSISWVTAFACLGYPPYYLLRRKLAVPPI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCH
TGLLSDLTLLTPVVLIMLYSSGGFSVAAQNTKFWYILPLLGAFSALAMSLTMVASSKLPV
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCH
SLFGALSYIEPMLLFVLSITVLNQSLDEGGSLFMYGMITLALFIMIADSMKGFLIRRRDN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCC
HLHGYREPQVGSFPPRRRFIDHRIEGVLKAHRFRKIRKYQQRIDKITRKIQALDSK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTTNQTVQGTLASVSSSFLFSLMFLFGLFMLPLTGTQVASWRVLMMLLSLVLLVSLTKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
WQHVFDYLKTLKTPKEWIIFVLPTPILGGQIWLFMWGPVNGFGLDVTLGYFLLPLVMIVI
HHHHHHHHHHHCCCHHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
GRFFYHEHMSVLQWLAAICAALGIGYDILQYGSISWVTAFACLGYPPYYLLRRKLAVPPI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCH
TGLLSDLTLLTPVVLIMLYSSGGFSVAAQNTKFWYILPLLGAFSALAMSLTMVASSKLPV
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCH
SLFGALSYIEPMLLFVLSITVLNQSLDEGGSLFMYGMITLALFIMIADSMKGFLIRRRDN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCC
HLHGYREPQVGSFPPRRRFIDHRIEGVLKAHRFRKIRKYQQRIDKITRKIQALDSK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]