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The map label for this gene is yfdE [H]

Identifier: 93006366

GI number: 93006366

Start: 1893505

End: 1894563

Strand: Direct

Name: yfdE [H]

Synonym: Pcryo_1540

Alternate gene names: 93006366

Gene position: 1893505-1894563 (Clockwise)

Preceding gene: 93006365

Following gene: 93006368

Centisome position: 61.88

GC content: 47.59

Gene sequence:

>1059_bases
ATGGCTAATCAAGCTGATGCTATGAAAAACTGCCTACAGGGGCTGCGCGTTGTTGATTTGACGCGCAACCTCCCAGGGCC
TTTTGCGACTAGACTACTTGCTGACTTGGGCGCGGATGTTATTAAGATTGAACCGCTTAATGGCGATCCTGCCCGCGCCT
TTGGCGAGCTATTCACCGCGTTAAACCATGGTAAAAAGACTCAAAAAATTGATTTTCGTGATTCAGCAGGTATTGAAACA
ATCAAAACGCATCTTAAAGATGCCGATGTGATGCTTGATAGTTTTCGCCCAGAAGTGCTTGAAGGTATAGGGCTGGACGC
TAAGACCCTGCATGCTATTAATCCAAAGCTGGTCATGGTATCGATTACGGGTTATGGCGTTGTTGATGGCGAGAGCATTA
CCCATGATTGGGCTAATAAAGCTGGTCATGACATCAACTTTATGGCGATGAGCGGCGTGCTTGATCAGCTCAAAACCGCA
GATGGTGATCAAGCAATGCCTAATATCCAGTTTGCAGATTTGGCAGGCGGCAGTGATACGGCAGTCATTACCCTTTTGGC
TGCCGTGTTGTCAGCACAGCGCACGGGTAAAGGTCGTCACGTTGCGGTCAGTATGACCCATAGCTTGTATCAGCATCTGG
TCATGCCAAAAGCAACTGGTAAGTTGGTTGCAAGCTTCTCTGGTAAAAACCCAAAGCCGGAGCATGATTTTTTAGGTGGT
CTACTACCCTGCTATCGTTTGTACAAAACAGCAGATGATCGTCATATGGCAGTCGGCTCTTTAGAGCTAAAGTTTTGGCA
AGGGTTATGTGACGTATTAGAATTACCTGAGCTCAAAACTAAACATTGGCAAATGGGTGTCATGCCTAATACCAGAGACA
GCCAAGAAACGGCGCAATTGGTCGCTGATACCTTTGCCAGATATGGTCTTGCTCACTGGCAGCAGGTTTTTGAATCGGCA
GATGTGTGCGTTACGCCAGTTCTTACACTAGAGGAAGCGCGCGCGCACCCTTTATTTGCGCACCAAGATGAGCATGGTGC
AACATTAGGCTGGCAGTAA

Upstream 100 bases:

>100_bases
TTTGTTGAACGTAGCCGCGAGCTTGCTAGCAAATATGGTAAACGGTTTGAACCGGCTCAAATATTAGTGGATATGGCTTC
AAGTGGTGAGGAGTTTATAG

Downstream 100 bases:

>100_bases
AATGACATAGTCAGGACGCTATGTTAAAGTTAATCGTCAAAAACCAAAGAAGGTTTATGTTGGAAAAAATCGTTCATGAT
ACCAACATTACAAATATCAG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MANQADAMKNCLQGLRVVDLTRNLPGPFATRLLADLGADVIKIEPLNGDPARAFGELFTALNHGKKTQKIDFRDSAGIET
IKTHLKDADVMLDSFRPEVLEGIGLDAKTLHAINPKLVMVSITGYGVVDGESITHDWANKAGHDINFMAMSGVLDQLKTA
DGDQAMPNIQFADLAGGSDTAVITLLAAVLSAQRTGKGRHVAVSMTHSLYQHLVMPKATGKLVASFSGKNPKPEHDFLGG
LLPCYRLYKTADDRHMAVGSLELKFWQGLCDVLELPELKTKHWQMGVMPNTRDSQETAQLVADTFARYGLAHWQQVFESA
DVCVTPVLTLEEARAHPLFAHQDEHGATLGWQ

Sequences:

>Translated_352_residues
MANQADAMKNCLQGLRVVDLTRNLPGPFATRLLADLGADVIKIEPLNGDPARAFGELFTALNHGKKTQKIDFRDSAGIET
IKTHLKDADVMLDSFRPEVLEGIGLDAKTLHAINPKLVMVSITGYGVVDGESITHDWANKAGHDINFMAMSGVLDQLKTA
DGDQAMPNIQFADLAGGSDTAVITLLAAVLSAQRTGKGRHVAVSMTHSLYQHLVMPKATGKLVASFSGKNPKPEHDFLGG
LLPCYRLYKTADDRHMAVGSLELKFWQGLCDVLELPELKTKHWQMGVMPNTRDSQETAQLVADTFARYGLAHWQQVFESA
DVCVTPVLTLEEARAHPLFAHQDEHGATLGWQ
>Mature_351_residues
ANQADAMKNCLQGLRVVDLTRNLPGPFATRLLADLGADVIKIEPLNGDPARAFGELFTALNHGKKTQKIDFRDSAGIETI
KTHLKDADVMLDSFRPEVLEGIGLDAKTLHAINPKLVMVSITGYGVVDGESITHDWANKAGHDINFMAMSGVLDQLKTAD
GDQAMPNIQFADLAGGSDTAVITLLAAVLSAQRTGKGRHVAVSMTHSLYQHLVMPKATGKLVASFSGKNPKPEHDFLGGL
LPCYRLYKTADDRHMAVGSLELKFWQGLCDVLELPELKTKHWQMGVMPNTRDSQETAQLVADTFARYGLAHWQQVFESAD
VCVTPVLTLEEARAHPLFAHQDEHGATLGWQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=338, Percent_Identity=31.3609467455621, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI266456254, Length=338, Percent_Identity=31.3609467455621, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI300863128, Length=346, Percent_Identity=29.1907514450867, Blast_Score=135, Evalue=4e-32,
Organism=Homo sapiens, GI300863124, Length=341, Percent_Identity=29.3255131964809, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI266458397, Length=274, Percent_Identity=31.021897810219, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458393, Length=272, Percent_Identity=31.25, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI13376042, Length=341, Percent_Identity=26.6862170087977, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI300863126, Length=152, Percent_Identity=36.1842105263158, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=32.6241134751773, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=32.6241134751773, Blast_Score=85, Evalue=8e-17,
Organism=Escherichia coli, GI87082093, Length=345, Percent_Identity=28.1159420289855, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788717, Length=210, Percent_Identity=30.952380952381, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786222, Length=346, Percent_Identity=23.9884393063584, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115535051, Length=363, Percent_Identity=31.6804407713499, Blast_Score=152, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=30.9248554913295, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI24585488, Length=333, Percent_Identity=32.4324324324324, Blast_Score=155, Evalue=4e-38,
Organism=Drosophila melanogaster, GI24648431, Length=367, Percent_Identity=25.6130790190736, Blast_Score=102, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38399; Mature: 38268

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQADAMKNCLQGLRVVDLTRNLPGPFATRLLADLGADVIKIEPLNGDPARAFGELFTA
CCCHHHHHHHHHHHCEEEHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
LNHGKKTQKIDFRDSAGIETIKTHLKDADVMLDSFRPEVLEGIGLDAKTLHAINPKLVMV
HHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHEECCCEEEEE
SITGYGVVDGESITHDWANKAGHDINFMAMSGVLDQLKTADGDQAMPNIQFADLAGGSDT
EEECCEEECCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
AVITLLAAVLSAQRTGKGRHVAVSMTHSLYQHLVMPKATGKLVASFSGKNPKPEHDFLGG
HHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH
LLPCYRLYKTADDRHMAVGSLELKFWQGLCDVLELPELKTKHWQMGVMPNTRDSQETAQL
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHH
VADTFARYGLAHWQQVFESADVCVTPVLTLEEARAHPLFAHQDEHGATLGWQ
HHHHHHHHHHHHHHHHHCCCCCEEEHHEEHHHHCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
ANQADAMKNCLQGLRVVDLTRNLPGPFATRLLADLGADVIKIEPLNGDPARAFGELFTA
CCHHHHHHHHHHHCEEEHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
LNHGKKTQKIDFRDSAGIETIKTHLKDADVMLDSFRPEVLEGIGLDAKTLHAINPKLVMV
HHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHEECCCEEEEE
SITGYGVVDGESITHDWANKAGHDINFMAMSGVLDQLKTADGDQAMPNIQFADLAGGSDT
EEECCEEECCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH
AVITLLAAVLSAQRTGKGRHVAVSMTHSLYQHLVMPKATGKLVASFSGKNPKPEHDFLGG
HHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH
LLPCYRLYKTADDRHMAVGSLELKFWQGLCDVLELPELKTKHWQMGVMPNTRDSQETAQL
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHH
VADTFARYGLAHWQQVFESADVCVTPVLTLEEARAHPLFAHQDEHGATLGWQ
HHHHHHHHHHHHHHHHHCCCCCEEEHHEEHHHHCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]