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The map label for this gene is pal [H]

Identifier: 93006335

GI number: 93006335

Start: 1856124

End: 1856642

Strand: Direct

Name: pal [H]

Synonym: Pcryo_1509

Alternate gene names: 93006335

Gene position: 1856124-1856642 (Clockwise)

Preceding gene: 93006333

Following gene: 93006336

Centisome position: 60.66

GC content: 50.1

Gene sequence:

>519_bases
ATGTCAACCAGTTTTTCAAAAATCGCTGCCCTCGCTGTATTATCAAGTGCTGTTGTTCTAGCATCAGGTTGTGCCACTAA
GCGTGCCACTTCTGAAGTCGTCGTTGCCCCTCTAGGTATCCCAGGCGGTCAAGTTGGCTACAATGGTGCTGTTATCGTAG
ACAACTCAAACGCAGTTATTACCGGTGCTGAGAACATCCAAGCCGTTGTATACTTTGCCTTTGACAGCAGTGCGATCACT
TCACAATCTGCAGGTGTCTTAAACCAACACGCGGGTCTGTTAAAATCTAACCCAAATGCAGGCGTAGTTATCGCGGGTCA
CACCGATGAGCGCGGTAGCCGTGAATATAACATCGCATTGGGTGAGCGCCGCGCCCAAGCAGCACGTGATTATCTTGCAG
CACAAGGCGTTGCAGCAAATAATATCCGTGTCATCAGCTATGGCGAAGAGCGTCCTGCTGCTGCCGGTACGAACGAAGAT
GCCTATGCCCAAAACCGCCGTGCTGAATTGTCTTACTAA

Upstream 100 bases:

>100_bases
TAAAGTAACATTTAGTATATTATAGATAGCAATTGCCTAAGTTTTATCGTAAGCAGTTTACAACAACAAATCTAATTCAT
TAAAATTTTTGGAGCTTATT

Downstream 100 bases:

>100_bases
GCATATAGCATAAGACATTATAAGCATTCAAAAGCCCAACAAGCCTATTGTTGGGCTTTTTGTTAGGCTAAGATAAATCG
CGATATAAACCATAAGTTTC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSTSFSKIAALAVLSSAVVLASGCATKRATSEVVVAPLGIPGGQVGYNGAVIVDNSNAVITGAENIQAVVYFAFDSSAIT
SQSAGVLNQHAGLLKSNPNAGVVIAGHTDERGSREYNIALGERRAQAARDYLAAQGVAANNIRVISYGEERPAAAGTNED
AYAQNRRAELSY

Sequences:

>Translated_172_residues
MSTSFSKIAALAVLSSAVVLASGCATKRATSEVVVAPLGIPGGQVGYNGAVIVDNSNAVITGAENIQAVVYFAFDSSAIT
SQSAGVLNQHAGLLKSNPNAGVVIAGHTDERGSREYNIALGERRAQAARDYLAAQGVAANNIRVISYGEERPAAAGTNED
AYAQNRRAELSY
>Mature_171_residues
STSFSKIAALAVLSSAVVLASGCATKRATSEVVVAPLGIPGGQVGYNGAVIVDNSNAVITGAENIQAVVYFAFDSSAITS
QSAGVLNQHAGLLKSNPNAGVVIAGHTDERGSREYNIALGERRAQAARDYLAAQGVAANNIRVISYGEERPAAAGTNEDA
YAQNRRAELSY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=104, Percent_Identity=51.9230769230769, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI48994946, Length=100, Percent_Identity=37, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17686; Mature: 17555

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSFSKIAALAVLSSAVVLASGCATKRATSEVVVAPLGIPGGQVGYNGAVIVDNSNAVI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEE
TGAENIQAVVYFAFDSSAITSQSAGVLNQHAGLLKSNPNAGVVIAGHTDERGSREYNIAL
EECCCCEEEEEEEECCCCCCCCCCCHHHHCCCCEECCCCCCEEEECCCCCCCCEEEEEEE
GERRAQAARDYLAAQGVAANNIRVISYGEERPAAAGTNEDAYAQNRRAELSY
CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCEEECCC
>Mature Secondary Structure 
STSFSKIAALAVLSSAVVLASGCATKRATSEVVVAPLGIPGGQVGYNGAVIVDNSNAVI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEE
TGAENIQAVVYFAFDSSAITSQSAGVLNQHAGLLKSNPNAGVVIAGHTDERGSREYNIAL
EECCCCEEEEEEEECCCCCCCCCCCHHHHCCCCEECCCCCCEEEECCCCCCCCEEEEEEE
GERRAQAARDYLAAQGVAANNIRVISYGEERPAAAGTNEDAYAQNRRAELSY
CHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]