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The map label for this gene is csgA [H]

Identifier: 93006129

GI number: 93006129

Start: 1589211

End: 1590002

Strand: Direct

Name: csgA [H]

Synonym: Pcryo_1301

Alternate gene names: 93006129

Gene position: 1589211-1590002 (Clockwise)

Preceding gene: 93006128

Following gene: 93006142

Centisome position: 51.94

GC content: 45.83

Gene sequence:

>792_bases
ATGAATACTAAAAATTATTTTATCATTGGTGGTACAGGCGGTATCGGTAAAGCCATGGTTGAACAATTGGTCCACACTGC
CGCCAATGAACACGCCAGCACCCTTACGAATAATGATATGCACACCAATACTGACATCCGTGTCTTTGCCACATACCATA
AAAGCGTGCCTGATTTTGAAGCAGAAAATCTGTATTGGATAGCGATGGATATCTGTGACGAGCAAAGTATCAAACAAGCA
GCTGATGCGATTAAGCAGCAAACCACACATATAGATTGGGTGATTAATTGTGCTGGACTACTGCATACCAAGACGCGTCA
GCCAGAAAAATCACTACAACAGATTGAAAGTGAGTTTTTTTTACAGAATATGCAGGTTAATGCTTTGGCAAGCTTGCTCA
TTGCCAAGCACATCAAGCCGCTATTGGCGAAAGCTGAACGAAGCGCAGACAAACCGGCGATTTTTGCGACGATATCGGCA
AGGGTAGGTAGTATCAGTGACAATCAACTTGGCGGTTGGTACAGCTACCGCATGAGTAAGGCGGCGCTTAATATGGGTAT
GAAAAACCTGAGTATTGAATGGAGTCGATCGCTTAAAAACGTCTGCGTGGTAGTGATGCAGCCCGGCACTGTCAACACCC
AGCTATCAGCTCCGTTTCAGGGCAACGTAGCTGACGGGCAGTTATTTTCGCCAGCCTATAGTGCTGAATGCTTGCTTGAG
GTACTCAGTAAGATGGGTGCTGCCCAATCAGGGAGTTTTGTGGATTGGGCAGGGGAATCTATACCGTGGTAA

Upstream 100 bases:

>100_bases
CTCCCCCTATGGTAAATAGGTTTACATTGAATCAATATAGTAGAAGTAGTTTTAATATTGCGTTATAACCCCTATAAATA
CTCACAAGGATGAACGCCTT

Downstream 100 bases:

>100_bases
GTTTTAGAATGAGTCTTACTTCATTAGAAATTGACGAGTTAAGGCGATCAATAGGCGACAAATAAATCCATAAATTCGTT
TACTGGTGTTTGCTCTAACC

Product: C factor cell-cell signaling protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNTKNYFIIGGTGGIGKAMVEQLVHTAANEHASTLTNNDMHTNTDIRVFATYHKSVPDFEAENLYWIAMDICDEQSIKQA
ADAIKQQTTHIDWVINCAGLLHTKTRQPEKSLQQIESEFFLQNMQVNALASLLIAKHIKPLLAKAERSADKPAIFATISA
RVGSISDNQLGGWYSYRMSKAALNMGMKNLSIEWSRSLKNVCVVVMQPGTVNTQLSAPFQGNVADGQLFSPAYSAECLLE
VLSKMGAAQSGSFVDWAGESIPW

Sequences:

>Translated_263_residues
MNTKNYFIIGGTGGIGKAMVEQLVHTAANEHASTLTNNDMHTNTDIRVFATYHKSVPDFEAENLYWIAMDICDEQSIKQA
ADAIKQQTTHIDWVINCAGLLHTKTRQPEKSLQQIESEFFLQNMQVNALASLLIAKHIKPLLAKAERSADKPAIFATISA
RVGSISDNQLGGWYSYRMSKAALNMGMKNLSIEWSRSLKNVCVVVMQPGTVNTQLSAPFQGNVADGQLFSPAYSAECLLE
VLSKMGAAQSGSFVDWAGESIPW
>Mature_263_residues
MNTKNYFIIGGTGGIGKAMVEQLVHTAANEHASTLTNNDMHTNTDIRVFATYHKSVPDFEAENLYWIAMDICDEQSIKQA
ADAIKQQTTHIDWVINCAGLLHTKTRQPEKSLQQIESEFFLQNMQVNALASLLIAKHIKPLLAKAERSADKPAIFATISA
RVGSISDNQLGGWYSYRMSKAALNMGMKNLSIEWSRSLKNVCVVVMQPGTVNTQLSAPFQGNVADGQLFSPAYSAECLLE
VLSKMGAAQSGSFVDWAGESIPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Caenorhabditis elegans, GI72001658, Length=275, Percent_Identity=25.4545454545455, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322779, Length=274, Percent_Identity=28.1021897810219, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24640547, Length=283, Percent_Identity=26.5017667844523, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 28887; Mature: 28887

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKNYFIIGGTGGIGKAMVEQLVHTAANEHASTLTNNDMHTNTDIRVFATYHKSVPDFE
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
AENLYWIAMDICDEQSIKQAADAIKQQTTHIDWVINCAGLLHTKTRQPEKSLQQIESEFF
CCCEEEEEEECCCHHHHHHHHHHHHHHHCHHHHEEEHHHHHHCCCCCHHHHHHHHHHHHH
LQNMQVNALASLLIAKHIKPLLAKAERSADKPAIFATISARVGSISDNQLGGWYSYRMSK
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCHHHHHHHH
AALNMGMKNLSIEWSRSLKNVCVVVMQPGTVNTQLSAPFQGNVADGQLFSPAYSAECLLE
HHHHCCHHHCCHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEECCCHHHHHHHH
VLSKMGAAQSGSFVDWAGESIPW
HHHHHCCCCCCCEEECCCCCCCC
>Mature Secondary Structure
MNTKNYFIIGGTGGIGKAMVEQLVHTAANEHASTLTNNDMHTNTDIRVFATYHKSVPDFE
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
AENLYWIAMDICDEQSIKQAADAIKQQTTHIDWVINCAGLLHTKTRQPEKSLQQIESEFF
CCCEEEEEEECCCHHHHHHHHHHHHHHHCHHHHEEEHHHHHHCCCCCHHHHHHHHHHHHH
LQNMQVNALASLLIAKHIKPLLAKAERSADKPAIFATISARVGSISDNQLGGWYSYRMSK
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCCCCHHHHHHHH
AALNMGMKNLSIEWSRSLKNVCVVVMQPGTVNTQLSAPFQGNVADGQLFSPAYSAECLLE
HHHHCCHHHCCHHHHHCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEECCCHHHHHHHH
VLSKMGAAQSGSFVDWAGESIPW
HHHHHCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]