Click here to switch to the map view.

The map label for this gene is exbD [H]

Identifier: 93006077

GI number: 93006077

Start: 1521012

End: 1521413

Strand: Direct

Name: exbD [H]

Synonym: Pcryo_1249

Alternate gene names: 93006077

Gene position: 1521012-1521413 (Clockwise)

Preceding gene: 93006076

Following gene: 93006084

Centisome position: 49.71

GC content: 46.27

Gene sequence:

>402_bases
ATGGCATTCCATCTAGGTGATGAAGAGACCCAAGGTATGAGCGAGATGAATCTCATTCCGCTCATTGATATTATGCTGGT
GCTGATGATTATCTTTTTGGTCACAGCCACAGTGATGAATCCAACCGTACCACTAGATCTGCCCGATACCAATGCCACAG
TAAGCGGCTTGCCTGATGAGATATTGCAAATAAGCATTGATAAAGACAATGGTCTATTTTTGGATGAGGAAGCGCTGACG
TTAGCGCAATTGCGATTGCGGCTTGAAGAAGCGTCAAAAGACGGTGCTAATCCGAATATTCATCTGCGGGCAGATCAAGA
CACCCGTTATGATATGGTGGCGCAAGTGCTGGCTGCCGCCAGTACTGCGGGTTTGACTAAGGTTGCTTTTGTCACTGAAT
AA

Upstream 100 bases:

>100_bases
TGGTGCCAAAGTGACTGATAGTCAAGTTGCTGATGGCAAAGTATAGACAGTGGCTATTCATTCGATAAATTAACGAATAA
AGAAAAATAAGGAGGCAGGT

Downstream 100 bases:

>100_bases
ATAGCCATTTATAGAATATAAAATTTCCTGCTGCAAATATTAAAGAAGGGGTTAAGATTATTAATCTTAGCCCCTTCTTT
AATGTCTTAAACCGTGTTTA

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MAFHLGDEETQGMSEMNLIPLIDIMLVLMIIFLVTATVMNPTVPLDLPDTNATVSGLPDEILQISIDKDNGLFLDEEALT
LAQLRLRLEEASKDGANPNIHLRADQDTRYDMVAQVLAAASTAGLTKVAFVTE

Sequences:

>Translated_133_residues
MAFHLGDEETQGMSEMNLIPLIDIMLVLMIIFLVTATVMNPTVPLDLPDTNATVSGLPDEILQISIDKDNGLFLDEEALT
LAQLRLRLEEASKDGANPNIHLRADQDTRYDMVAQVLAAASTAGLTKVAFVTE
>Mature_132_residues
AFHLGDEETQGMSEMNLIPLIDIMLVLMIIFLVTATVMNPTVPLDLPDTNATVSGLPDEILQISIDKDNGLFLDEEALTL
AQLRLRLEEASKDGANPNIHLRADQDTRYDMVAQVLAAASTAGLTKVAFVTE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=135, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14482; Mature: 14351

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFHLGDEETQGMSEMNLIPLIDIMLVLMIIFLVTATVMNPTVPLDLPDTNATVSGLPDE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
ILQISIDKDNGLFLDEEALTLAQLRLRLEEASKDGANPNIHLRADQDTRYDMVAQVLAAA
HEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
STAGLTKVAFVTE
HCCCCEEEEEECC
>Mature Secondary Structure 
AFHLGDEETQGMSEMNLIPLIDIMLVLMIIFLVTATVMNPTVPLDLPDTNATVSGLPDE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
ILQISIDKDNGLFLDEEALTLAQLRLRLEEASKDGANPNIHLRADQDTRYDMVAQVLAAA
HEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
STAGLTKVAFVTE
HCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]