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The map label for this gene is rarD [C]

Identifier: 93006035

GI number: 93006035

Start: 1463273

End: 1464232

Strand: Direct

Name: rarD [C]

Synonym: Pcryo_1207

Alternate gene names: 93006035

Gene position: 1463273-1464232 (Clockwise)

Preceding gene: 93006034

Following gene: 93006036

Centisome position: 47.82

GC content: 43.44

Gene sequence:

>960_bases
ATGACTACCCAAAATGTCATCAAAAAACCTGCTGCTCCCATTAAAACGACCAGACGTGGTATTGTCACCGCGCTGATAGC
TTTTTCTATCTGGGGCGCTTTTCCTTTATACTTTAAGCAATTATCGGACTATAATGCCACCGAAATCATTGGTCACCGCA
TTGTTTGGACCTTTGCTTGTCTTTTAGTTGTGCTAGTAGTGACCAAGCGCTGGCAGTGGATTGACACGCTAAAGAAAAAC
CCGAGGTGGATAGCCTATACCTTTGTGTCAGGTATTATCATCGCGATAAACTGGCTCACTTATGTATGGGCGGTCAATAA
CAACCAGATTTTAGAGGCCAGTTTGGGGTACTTTATTGGACCACTGGTTGGCGTAGGGTTGTCGATGTTACTGTTCAAAG
AGCGCCTGCGTACTTTGCAATGGGTTGCAATTGGTTTTGCGCTATTATCAGTCGTTATTCAAGTTGTCATGCTAGGTAGC
CTGCCGTGGGTATCGTTAATATTGGCGTTTAGCTTTAGTACTTACGGCACCATTCAGCGCCAAACCCCTCTGACAGCAGT
CGATGCAATGTTTGTTGAGACAGCAATGCTATTGCCTATTTTTATCGCATGGTTCTGGCAGTCTGATGTGGCGAGTAGTA
ATATCAGCTTTTGGTTTACGCCTTCTATTTGGCTGCTTATGTTGGCAGGACCTATTACTCTGATACCGCTATTGATGTTT
AACAAATCCACCAAGCTGGTCGCTTATAGTATCCTCAGTTTTATGAATTATCTGACGCCGACCTTTATTTTCTTCTTGGC
GGTATTCTATTACAATGAGCCTTTTGATTTACATCGTTTGGCAGTCTTTGGTTTAATTTGGCTGGGTCTGCTATTATTCA
GTATCGATCTATGGCGTCATCGCCCAAGTAAGCAGCTAAAAGCAGCACGCCTACGTGAAGAAGCATTAACGTCTAAATAA

Upstream 100 bases:

>100_bases
TTATTCTATCTGTAGTGACCCTGTACTCTTAACACCAAATTACCATCAATGATAATAATTGGGTGAGGGTGCGCTTTGCT
CTAAAAAGTTGTCCTATCTT

Downstream 100 bases:

>100_bases
ATCATCAAATTAAAATAGATAGTAAAAATATCATTAACAAGGATGCTTGTATGTTTCATACCCAGTCTGATGTCGTATTT
GTAAAAGGCTTAAAAGTAGA

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTTQNVIKKPAAPIKTTRRGIVTALIAFSIWGAFPLYFKQLSDYNATEIIGHRIVWTFACLLVVLVVTKRWQWIDTLKKN
PRWIAYTFVSGIIIAINWLTYVWAVNNNQILEASLGYFIGPLVGVGLSMLLFKERLRTLQWVAIGFALLSVVIQVVMLGS
LPWVSLILAFSFSTYGTIQRQTPLTAVDAMFVETAMLLPIFIAWFWQSDVASSNISFWFTPSIWLLMLAGPITLIPLLMF
NKSTKLVAYSILSFMNYLTPTFIFFLAVFYYNEPFDLHRLAVFGLIWLGLLLFSIDLWRHRPSKQLKAARLREEALTSK

Sequences:

>Translated_319_residues
MTTQNVIKKPAAPIKTTRRGIVTALIAFSIWGAFPLYFKQLSDYNATEIIGHRIVWTFACLLVVLVVTKRWQWIDTLKKN
PRWIAYTFVSGIIIAINWLTYVWAVNNNQILEASLGYFIGPLVGVGLSMLLFKERLRTLQWVAIGFALLSVVIQVVMLGS
LPWVSLILAFSFSTYGTIQRQTPLTAVDAMFVETAMLLPIFIAWFWQSDVASSNISFWFTPSIWLLMLAGPITLIPLLMF
NKSTKLVAYSILSFMNYLTPTFIFFLAVFYYNEPFDLHRLAVFGLIWLGLLLFSIDLWRHRPSKQLKAARLREEALTSK
>Mature_318_residues
TTQNVIKKPAAPIKTTRRGIVTALIAFSIWGAFPLYFKQLSDYNATEIIGHRIVWTFACLLVVLVVTKRWQWIDTLKKNP
RWIAYTFVSGIIIAINWLTYVWAVNNNQILEASLGYFIGPLVGVGLSMLLFKERLRTLQWVAIGFALLSVVIQVVMLGSL
PWVSLILAFSFSTYGTIQRQTPLTAVDAMFVETAMLLPIFIAWFWQSDVASSNISFWFTPSIWLLMLAGPITLIPLLMFN
KSTKLVAYSILSFMNYLTPTFIFFLAVFYYNEPFDLHRLAVFGLIWLGLLLFSIDLWRHRPSKQLKAARLREEALTSK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=283, Percent_Identity=39.2226148409894, Blast_Score=207, Evalue=6e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 36507; Mature: 36376

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQNVIKKPAAPIKTTRRGIVTALIAFSIWGAFPLYFKQLSDYNATEIIGHRIVWTFAC
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LLVVLVVTKRWQWIDTLKKNPRWIAYTFVSGIIIAINWLTYVWAVNNNQILEASLGYFIG
HHHHHHHHCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHH
PLVGVGLSMLLFKERLRTLQWVAIGFALLSVVIQVVMLGSLPWVSLILAFSFSTYGTIQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEC
QTPLTAVDAMFVETAMLLPIFIAWFWQSDVASSNISFWFTPSIWLLMLAGPITLIPLLMF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
NKSTKLVAYSILSFMNYLTPTFIFFLAVFYYNEPFDLHRLAVFGLIWLGLLLFSIDLWRH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
RPSKQLKAARLREEALTSK
CCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTQNVIKKPAAPIKTTRRGIVTALIAFSIWGAFPLYFKQLSDYNATEIIGHRIVWTFAC
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH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CCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]