| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is ycbZ [H]
Identifier: 93005884
GI number: 93005884
Start: 1269686
End: 1272613
Strand: Reverse
Name: ycbZ [H]
Synonym: Pcryo_1056
Alternate gene names: 93005884
Gene position: 1272613-1269686 (Counterclockwise)
Preceding gene: 93005895
Following gene: 93005883
Centisome position: 41.59
GC content: 44.06
Gene sequence:
>2928_bases ATGACAGAACAGACAAACATACCCCTGAATAAAGACCAACAAGACATTAGCGATAATACCGCAGAGGCTATGATGCCTAT TAGTGACTCAAGTAACAAGCATCCCCATGAAGAGCCCTCAGCCAATAAGGAATCATTGGATAAAAATTCCTTAGATAAGA AGAAATTGGATAAAAGCTTAAAACGTAAAAAAACGGCTCGTAAGTCGGTAGAAAAAGAAAATATCCCTAACGCTACTGAT GCGCCTATTACACCTCATCCTATATTCATAGAAGTCAGTCAGCGCTGCCTCGTCGCGACAAACCAGCTTAAGCGCTATAG TAAACCCAGTCTGCTGCCAGCCGATACTCGTAGCGCACCCGATTTAGATATTGGTTTTGGGCAACAGCGGGCGCTTAAGG CATTGCATACGGCACTCGATATTCATGCTAGTGGCTATCATGTGTTTGCGGCTGGCGAGAATGGTTTAGGTAAACGTACG GTGATTAGTCGCTTGCTCAGTCTTATCGCAGCCGATGCACCGACGCCGGATGATTGGGTATATGTACACAACTTCACTGA CCCTCGGACTCCGTTAGCACTACGCTTACCTGCTGGTCAGGCCGCTGTCTTGCAACACCAAGTCAATACTTTGTGGCAAC AAGCCAAAAAACGGCTGAGTCAACGCTTTCGCAGCGATCAGTATCAAAGCAAGATAGAAGCCATCAAAAATGACACACAT CAAAAGGAAAGTCACGCCTATGATGTGCTCAATGCTGAGGGCAAGCAGTATGATCTAGCGTTAACGTTTCGGCCGTTTGA TAATAAAGCCGTTTTTGTTCATCCAAGCCAGCTTGCAACAGAAACGAGCGATATGGATGATAAAGAAGACAAACTCTCTA ATAGTCATAAAAACAATACCCTTATCAATGACAATAAGGAAGCGGCAACCGCTAGCACCGATGAGAGCGATATTAAGGCT AATGATAGTTCATATAGCAGCGAATATGAAACTGAGCTAAATAATTTTGCTCAAAAAAATCATATGCAAAGACGGCTGAG TCAGCTGACGATTGCTTTAGAGCAATTAGAAGATGAAGCCAATGATGCCATCGAGTCGCTACATCGCAATATTGCCAAAC GGGCACTACAGCCGTTATTTACCCCTATTTATGAGCAGTTCAGTGCTCAACCACTGGTCGTTGAGTATCTAAAAGTAGTC TTTGCCGATATGGTTACTCATGTCGAGCGTATCGTTAATGGAGATGATGAAGAGTTTGTAACGGCATTGCTCGCCACGAC GCCTAGTAGATATGCGGTCAATGTTATTAGCAGTCATGAGCCTGATAGTGGTGCGCCCGTTATCTTTGAAGACTTGCCTA CTCACTTAAATTTATTAGGTCATGTAGAGCAAATCACTCAATTAGGTACGGTTACGACCGATGTCAGCATGATTCGTGCC GGCGCTTTACATCGTGCTAATGGAGGTTACTTACTGCTTGAAGCGAGTCATTTGCTTGAGCATCCTTATGCGTGGCAAGG TCTTAAGCGTGCACTACAGTCTCGTAAAATTAAACTCTCAAGTCTTGAGCAAATGCTGACCTTAACAGGTAGCTTATCTT TATCTCCTGCGCCCATTGATCTTGATATAAAGGTCATTTTATTGGGTGAAGCTGATTTGTATTACGAATTACTGGAGCTT GAGCCGGAGTTTGATGCGGTATTTAAGGTACGTGCTGACTTCCACGATGATGTGGTTCGTACTCATGAGCACGAGCTCGC GTTGGTCGGAAAGATGGCAGATATCATTGATTACGCCAATCTTTATCCATTTGATAGAAGGGCACAAGCTGCTCTACTTG AGCATTTAAGTCTGCAAGCAGAGGATCAAGACCGTCTAAGTCTGCACAGTGATTTGCTTATTAAGCTGTTGCATGAATCC AATCGCCATGCGCGTTTGGGCGGACAGGATATCGTCAGTGCCAAACATGTGGTACAAGCTATTGAAGATATGGATGAGCG CTCAGGATATTTGCGCGACCTCTATTGGGATGAGCTCAAAAACGGTCAGCAGCTTATTCAAACTCAAGGAGAGGCAGTTG GGCAAGTCAACGCCTTAACAGTGGTAAGCTATGCCGATAGTGAGTTTGGCATGCCTGCCCGTCTCACAGCGGTCATTCAG CCAAATATCGGTACGGGTGAAATCCTAGATATCGAGCGTGATGTTGATTTGGGCGGTAGCTTGCACGCCAAAGGTATGCT GATTATGACGAGCTACTTACGAGCGTTATTTAGTCAGCACCATGCACTAAATTTTAGTGCTTCACTGGCTTTTGAGCAAA GCTATGCGCATATTGATGGTGATAGCGCGACTGTCAGTGAGGGCTGTGCCCTGTTATCTGCCTTAGCAAACGTACCGATT AATCAATCCCTTGCTATTACAGGTTCTATGAATCAGCTTGGTGAAGTACAAGCCGTCGGCGGCATCAATTCCAAGATTGC AGGTTTCTTTGATGCGTGCCGCGAGCAAGAATTGACTGGACAGCAAGGCGTGGTCATTCCTATGGCAAACGTCAAACAGC TTATGCTGCGCGACGATATCATTACTGCTGTAAAAGCAGGTAGCTTTCATATATATGGGGTGCACACGCTCAGTGAAGCG CTCACATTAATGACGGGATTACCTGTCGATACAGTGAATAAGAAAAGTCGCTACCGCAAAGAGACGTTGTTTGGTAAAGT CTTAAGTCGTTTGATGCTATGGGATGAAAACCAAAATACAGATGATGATATTGACGATAAAAAATCAAAAAAGAAAGCCA AAAAGAAACGCCAAAAAAAAGAAGATAAGAATAAAGTCTCTAAGAAAGAAAAGGCTATTAAAGAACAGCTTATTAAAGAG GATAACGACACTATCGTAGAAAAAGTTATTATAGATGAAGCACGCTAG
Upstream 100 bases:
>100_bases AAGATGTTCTATTACTATAAATGCTAATGTATTCATTGCCACATCAAAAAAACCAAAATCAATCATCATTTAATACTTTT AAGCGACTGACCCTATTCCT
Downstream 100 bases:
>100_bases ATATTAGGGTGCTCTCTGCAATGCTATATAATAACCATCTGCCGATGTCCTTTCATGCTCATACTAATGTGAATAACCCG CTGACTTTATAATCGTGACA
Product: peptidase S16, lon-like
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 975; Mature: 974
Protein sequence:
>975_residues MTEQTNIPLNKDQQDISDNTAEAMMPISDSSNKHPHEEPSANKESLDKNSLDKKKLDKSLKRKKTARKSVEKENIPNATD APITPHPIFIEVSQRCLVATNQLKRYSKPSLLPADTRSAPDLDIGFGQQRALKALHTALDIHASGYHVFAAGENGLGKRT VISRLLSLIAADAPTPDDWVYVHNFTDPRTPLALRLPAGQAAVLQHQVNTLWQQAKKRLSQRFRSDQYQSKIEAIKNDTH QKESHAYDVLNAEGKQYDLALTFRPFDNKAVFVHPSQLATETSDMDDKEDKLSNSHKNNTLINDNKEAATASTDESDIKA NDSSYSSEYETELNNFAQKNHMQRRLSQLTIALEQLEDEANDAIESLHRNIAKRALQPLFTPIYEQFSAQPLVVEYLKVV FADMVTHVERIVNGDDEEFVTALLATTPSRYAVNVISSHEPDSGAPVIFEDLPTHLNLLGHVEQITQLGTVTTDVSMIRA GALHRANGGYLLLEASHLLEHPYAWQGLKRALQSRKIKLSSLEQMLTLTGSLSLSPAPIDLDIKVILLGEADLYYELLEL EPEFDAVFKVRADFHDDVVRTHEHELALVGKMADIIDYANLYPFDRRAQAALLEHLSLQAEDQDRLSLHSDLLIKLLHES NRHARLGGQDIVSAKHVVQAIEDMDERSGYLRDLYWDELKNGQQLIQTQGEAVGQVNALTVVSYADSEFGMPARLTAVIQ PNIGTGEILDIERDVDLGGSLHAKGMLIMTSYLRALFSQHHALNFSASLAFEQSYAHIDGDSATVSEGCALLSALANVPI NQSLAITGSMNQLGEVQAVGGINSKIAGFFDACREQELTGQQGVVIPMANVKQLMLRDDIITAVKAGSFHIYGVHTLSEA LTLMTGLPVDTVNKKSRYRKETLFGKVLSRLMLWDENQNTDDDIDDKKSKKKAKKKRQKKEDKNKVSKKEKAIKEQLIKE DNDTIVEKVIIDEAR
Sequences:
>Translated_975_residues MTEQTNIPLNKDQQDISDNTAEAMMPISDSSNKHPHEEPSANKESLDKNSLDKKKLDKSLKRKKTARKSVEKENIPNATD APITPHPIFIEVSQRCLVATNQLKRYSKPSLLPADTRSAPDLDIGFGQQRALKALHTALDIHASGYHVFAAGENGLGKRT VISRLLSLIAADAPTPDDWVYVHNFTDPRTPLALRLPAGQAAVLQHQVNTLWQQAKKRLSQRFRSDQYQSKIEAIKNDTH QKESHAYDVLNAEGKQYDLALTFRPFDNKAVFVHPSQLATETSDMDDKEDKLSNSHKNNTLINDNKEAATASTDESDIKA NDSSYSSEYETELNNFAQKNHMQRRLSQLTIALEQLEDEANDAIESLHRNIAKRALQPLFTPIYEQFSAQPLVVEYLKVV FADMVTHVERIVNGDDEEFVTALLATTPSRYAVNVISSHEPDSGAPVIFEDLPTHLNLLGHVEQITQLGTVTTDVSMIRA GALHRANGGYLLLEASHLLEHPYAWQGLKRALQSRKIKLSSLEQMLTLTGSLSLSPAPIDLDIKVILLGEADLYYELLEL EPEFDAVFKVRADFHDDVVRTHEHELALVGKMADIIDYANLYPFDRRAQAALLEHLSLQAEDQDRLSLHSDLLIKLLHES NRHARLGGQDIVSAKHVVQAIEDMDERSGYLRDLYWDELKNGQQLIQTQGEAVGQVNALTVVSYADSEFGMPARLTAVIQ PNIGTGEILDIERDVDLGGSLHAKGMLIMTSYLRALFSQHHALNFSASLAFEQSYAHIDGDSATVSEGCALLSALANVPI NQSLAITGSMNQLGEVQAVGGINSKIAGFFDACREQELTGQQGVVIPMANVKQLMLRDDIITAVKAGSFHIYGVHTLSEA LTLMTGLPVDTVNKKSRYRKETLFGKVLSRLMLWDENQNTDDDIDDKKSKKKAKKKRQKKEDKNKVSKKEKAIKEQLIKE DNDTIVEKVIIDEAR >Mature_974_residues TEQTNIPLNKDQQDISDNTAEAMMPISDSSNKHPHEEPSANKESLDKNSLDKKKLDKSLKRKKTARKSVEKENIPNATDA PITPHPIFIEVSQRCLVATNQLKRYSKPSLLPADTRSAPDLDIGFGQQRALKALHTALDIHASGYHVFAAGENGLGKRTV ISRLLSLIAADAPTPDDWVYVHNFTDPRTPLALRLPAGQAAVLQHQVNTLWQQAKKRLSQRFRSDQYQSKIEAIKNDTHQ KESHAYDVLNAEGKQYDLALTFRPFDNKAVFVHPSQLATETSDMDDKEDKLSNSHKNNTLINDNKEAATASTDESDIKAN DSSYSSEYETELNNFAQKNHMQRRLSQLTIALEQLEDEANDAIESLHRNIAKRALQPLFTPIYEQFSAQPLVVEYLKVVF ADMVTHVERIVNGDDEEFVTALLATTPSRYAVNVISSHEPDSGAPVIFEDLPTHLNLLGHVEQITQLGTVTTDVSMIRAG ALHRANGGYLLLEASHLLEHPYAWQGLKRALQSRKIKLSSLEQMLTLTGSLSLSPAPIDLDIKVILLGEADLYYELLELE PEFDAVFKVRADFHDDVVRTHEHELALVGKMADIIDYANLYPFDRRAQAALLEHLSLQAEDQDRLSLHSDLLIKLLHESN RHARLGGQDIVSAKHVVQAIEDMDERSGYLRDLYWDELKNGQQLIQTQGEAVGQVNALTVVSYADSEFGMPARLTAVIQP NIGTGEILDIERDVDLGGSLHAKGMLIMTSYLRALFSQHHALNFSASLAFEQSYAHIDGDSATVSEGCALLSALANVPIN QSLAITGSMNQLGEVQAVGGINSKIAGFFDACREQELTGQQGVVIPMANVKQLMLRDDIITAVKAGSFHIYGVHTLSEAL TLMTGLPVDTVNKKSRYRKETLFGKVLSRLMLWDENQNTDDDIDDKKSKKKAKKKRQKKEDKNKVSKKEKAIKEQLIKED NDTIVEKVIIDEAR
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=416, Percent_Identity=36.7788461538462, Blast_Score=269, Evalue=8e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 108685; Mature: 108554
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQTNIPLNKDQQDISDNTAEAMMPISDSSNKHPHEEPSANKESLDKNSLDKKKLDKSL CCCCCCCCCCCCHHHHCCCHHHHEECCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHH KRKKTARKSVEKENIPNATDAPITPHPIFIEVSQRCLVATNQLKRYSKPSLLPADTRSAP HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC DLDIGFGQQRALKALHTALDIHASGYHVFAAGENGLGKRTVISRLLSLIAADAPTPDDWV CCCCCCCHHHHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEE YVHNFTDPRTPLALRLPAGQAAVLQHQVNTLWQQAKKRLSQRFRSDQYQSKIEAIKNDTH EEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH QKESHAYDVLNAEGKQYDLALTFRPFDNKAVFVHPSQLATETSDMDDKEDKLSNSHKNNT HHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCHHHHCCCCCCCCHHHHHCCCCCCCC LINDNKEAATASTDESDIKANDSSYSSEYETELNNFAQKNHMQRRLSQLTIALEQLEDEA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDAIESLHRNIAKRALQPLFTPIYEQFSAQPLVVEYLKVVFADMVTHVERIVNGDDEEFV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TALLATTPSRYAVNVISSHEPDSGAPVIFEDLPTHLNLLGHVEQITQLGTVTTDVSMIRA HHHHHCCCCCCEEEEECCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH GALHRANGGYLLLEASHLLEHPYAWQGLKRALQSRKIKLSSLEQMLTLTGSLSLSPAPID CCCEECCCCEEEEECHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC LDIKVILLGEADLYYELLELEPEFDAVFKVRADFHDDVVRTHEHELALVGKMADIIDYAN EEEEEEEECCHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH LYPFDRRAQAALLEHLSLQAEDQDRLSLHSDLLIKLLHESNRHARLGGQDIVSAKHVVQA CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH IEDMDERSGYLRDLYWDELKNGQQLIQTQGEAVGQVNALTVVSYADSEFGMPARLTAVIQ HHHHHHHCCHHHHHHHHHHHCHHHHHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEE PNIGTGEILDIERDVDLGGSLHAKGMLIMTSYLRALFSQHHALNFSASLAFEQSYAHIDG CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEECC DSATVSEGCALLSALANVPINQSLAITGSMNQLGEVQAVGGINSKIAGFFDACREQELTG CCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC QQGVVIPMANVKQLMLRDDIITAVKAGSFHIYGVHTLSEALTLMTGLPVDTVNKKSRYRK CCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHH ETLFGKVLSRLMLWDENQNTDDDIDDKKSKKKAKKKRQKKEDKNKVSKKEKAIKEQLIKE HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNDTIVEKVIIDEAR CCHHHHHHHHHCCCC >Mature Secondary Structure TEQTNIPLNKDQQDISDNTAEAMMPISDSSNKHPHEEPSANKESLDKNSLDKKKLDKSL CCCCCCCCCCCHHHHCCCHHHHEECCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHH KRKKTARKSVEKENIPNATDAPITPHPIFIEVSQRCLVATNQLKRYSKPSLLPADTRSAP HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC DLDIGFGQQRALKALHTALDIHASGYHVFAAGENGLGKRTVISRLLSLIAADAPTPDDWV CCCCCCCHHHHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEE YVHNFTDPRTPLALRLPAGQAAVLQHQVNTLWQQAKKRLSQRFRSDQYQSKIEAIKNDTH EEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH QKESHAYDVLNAEGKQYDLALTFRPFDNKAVFVHPSQLATETSDMDDKEDKLSNSHKNNT HHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCHHHHCCCCCCCCHHHHHCCCCCCCC LINDNKEAATASTDESDIKANDSSYSSEYETELNNFAQKNHMQRRLSQLTIALEQLEDEA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDAIESLHRNIAKRALQPLFTPIYEQFSAQPLVVEYLKVVFADMVTHVERIVNGDDEEFV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH TALLATTPSRYAVNVISSHEPDSGAPVIFEDLPTHLNLLGHVEQITQLGTVTTDVSMIRA HHHHHCCCCCCEEEEECCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH GALHRANGGYLLLEASHLLEHPYAWQGLKRALQSRKIKLSSLEQMLTLTGSLSLSPAPID CCCEECCCCEEEEECHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC LDIKVILLGEADLYYELLELEPEFDAVFKVRADFHDDVVRTHEHELALVGKMADIIDYAN EEEEEEEECCHHHHHHHHHCCCCHHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH LYPFDRRAQAALLEHLSLQAEDQDRLSLHSDLLIKLLHESNRHARLGGQDIVSAKHVVQA CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH IEDMDERSGYLRDLYWDELKNGQQLIQTQGEAVGQVNALTVVSYADSEFGMPARLTAVIQ HHHHHHHCCHHHHHHHHHHHCHHHHHHHCCHHHCCCEEEEEEEECCCCCCCCEEEEEEEE PNIGTGEILDIERDVDLGGSLHAKGMLIMTSYLRALFSQHHALNFSASLAFEQSYAHIDG CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEECC DSATVSEGCALLSALANVPINQSLAITGSMNQLGEVQAVGGINSKIAGFFDACREQELTG CCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC QQGVVIPMANVKQLMLRDDIITAVKAGSFHIYGVHTLSEALTLMTGLPVDTVNKKSRYRK CCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHH ETLFGKVLSRLMLWDENQNTDDDIDDKKSKKKAKKKRQKKEDKNKVSKKEKAIKEQLIKE HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNDTIVEKVIIDEAR CCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]