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The map label for this gene is intR [H]

Identifier: 93005789

GI number: 93005789

Start: 1147481

End: 1148725

Strand: Reverse

Name: intR [H]

Synonym: Pcryo_0961

Alternate gene names: 93005789

Gene position: 1148725-1147481 (Counterclockwise)

Preceding gene: 93005790

Following gene: 93005788

Centisome position: 37.54

GC content: 46.27

Gene sequence:

>1245_bases
ATGGCTACTATACAAGGACGGTTTGGCAAACTAATTGCCGACTTCTACTACCTAGGTATACGTTGTCGAGAAAAGACTAG
CTTAGAAGATAACCCAGCTAACAGAAGAAAATTAGCGACTGTTTTGAAAAAAATAGACGCAGAAATAACCCTAGGCATCT
TCGACTATGGCGCCTACTTTCCGAAGAGTACTCGTCTAAAAGAGATGACAGCACTGGCCGATAGAGCGGAAGCTTGTATC
AGTCGTAATCCAACCTTTAGACAGTTTGTCGATATTTGGTATGAGGAGAAGAAGATTGAATGGCGGCCAAGCTATCGGCA
AAAGACGCAGATTATTTTAGATAAGTACTTGTTACCTGAGTTTGGTGGCAAAGCGGTACATGCCATAAAAAAACCAGACT
TGCTGACCTTCCGTAGCTCCCTCGCCAAAGTTTGTTACGGTAAAGATGGTCAGTCAAGTCTGTCAGTAGCACGGATCAAC
CAGATCATGATACTTCTTCGTATGATACTAGAAGAAGCGTCGGATCGCCATGAGTTTGAGATGCCTTATAAAAATATTAA
GAATCTCAAGCAAGCGCGTCCGGATGTGAATCCTTTTACACTTTCTGAGGTATGGCTGATTTTAAAGCATGTTCGTGCTG
ATTATAGGCCCTACTACACTATTCGCTTCTTTACAGGGATGCGTACCAGTGAGATCGATGGGCTTAAGTGGGACTGCATT
AACTTTGATCGCCGTGAGATCAGTATTCGCGGTGCATTGGTGAATGGGGAGATGGGTCCAACGAAAACGTTAGGCTCGCA
ACGTGATATTGCGATGTCACAACTGGTCTATGACGCACTACAAGAGCAGAAGACGCGTACCTTTGGTAAGTCAGAGTTTG
TGTTTTGCAATTCACAGGGCAATCCGATGGAGTATCGCAATGTGAACCGGCGGGTATGGAAACCCACGCTTGCCCTACTC
GGTCTGAAACATAGGCGGGCTTATCAGACTCGGCATACGGCAGCGACGCTATGGCTGGCTGCTGGTGAGAATCCTGAATG
GATCGCTCGGCAGATGGGTCACAGTAGTACGGAGATGCTGTTTCGGGTATATAGCCGTTATGTACCTGATATCACCCGAC
AGGATGGCTCGGCAATGGATAACTTGCTACTAGCGAGCAAGGAGAAGCTAACCAGCGCATCTAATAGCTCTGAAGGTGAA
GCACTAATCAGGGACTCACAAACTGACAAGGAGACGTCACAATGA

Upstream 100 bases:

>100_bases
AAGATTCTGTATGTATGGGAGCGTATCGAAGAGGATATGTGCAAGCCGGTTATGAGCGCTATCAACGGTATGGCACTTCA
ATAATAGAAGGAGATTTATC

Downstream 100 bases:

>100_bases
AAATTATCAATTACGAGGAGCTGTTTGGTGAGTTTAAACCCGACGGTGCAATTAGTGAGGATGCTAATAAGATTGCTAAT
GCATTGATGCGTGAGTTGTA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MATIQGRFGKLIADFYYLGIRCREKTSLEDNPANRRKLATVLKKIDAEITLGIFDYGAYFPKSTRLKEMTALADRAEACI
SRNPTFRQFVDIWYEEKKIEWRPSYRQKTQIILDKYLLPEFGGKAVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARIN
QIMILLRMILEEASDRHEFEMPYKNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPYYTIRFFTGMRTSEIDGLKWDCI
NFDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQGNPMEYRNVNRRVWKPTLALL
GLKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEMLFRVYSRYVPDITRQDGSAMDNLLLASKEKLTSASNSSEGE
ALIRDSQTDKETSQ

Sequences:

>Translated_414_residues
MATIQGRFGKLIADFYYLGIRCREKTSLEDNPANRRKLATVLKKIDAEITLGIFDYGAYFPKSTRLKEMTALADRAEACI
SRNPTFRQFVDIWYEEKKIEWRPSYRQKTQIILDKYLLPEFGGKAVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARIN
QIMILLRMILEEASDRHEFEMPYKNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPYYTIRFFTGMRTSEIDGLKWDCI
NFDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQGNPMEYRNVNRRVWKPTLALL
GLKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEMLFRVYSRYVPDITRQDGSAMDNLLLASKEKLTSASNSSEGE
ALIRDSQTDKETSQ
>Mature_413_residues
ATIQGRFGKLIADFYYLGIRCREKTSLEDNPANRRKLATVLKKIDAEITLGIFDYGAYFPKSTRLKEMTALADRAEACIS
RNPTFRQFVDIWYEEKKIEWRPSYRQKTQIILDKYLLPEFGGKAVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARINQ
IMILLRMILEEASDRHEFEMPYKNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPYYTIRFFTGMRTSEIDGLKWDCIN
FDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQGNPMEYRNVNRRVWKPTLALLG
LKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEMLFRVYSRYVPDITRQDGSAMDNLLLASKEKLTSASNSSEGEA
LIRDSQTDKETSQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=408, Percent_Identity=24.5098039215686, Blast_Score=118, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47810; Mature: 47679

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIQGRFGKLIADFYYLGIRCREKTSLEDNPANRRKLATVLKKIDAEITLGIFDYGAYF
CCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
PKSTRLKEMTALADRAEACISRNPTFRQFVDIWYEEKKIEWRPSYRQKTQIILDKYLLPE
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCC
FGGKAVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARINQIMILLRMILEEASDRHEFE
CCCCCEEHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MPYKNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPYYTIRFFTGMRTSEIDGLKWDCI
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEE
NFDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQG
CCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
NPMEYRNVNRRVWKPTLALLGLKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEML
CCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCHHHHH
FRVYSRYVPDITRQDGSAMDNLLLASKEKLTSASNSSEGEALIRDSQTDKETSQ
HHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
ATIQGRFGKLIADFYYLGIRCREKTSLEDNPANRRKLATVLKKIDAEITLGIFDYGAYF
CCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
PKSTRLKEMTALADRAEACISRNPTFRQFVDIWYEEKKIEWRPSYRQKTQIILDKYLLPE
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCC
FGGKAVHAIKKPDLLTFRSSLAKVCYGKDGQSSLSVARINQIMILLRMILEEASDRHEFE
CCCCCEEHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MPYKNIKNLKQARPDVNPFTLSEVWLILKHVRADYRPYYTIRFFTGMRTSEIDGLKWDCI
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEE
NFDRREISIRGALVNGEMGPTKTLGSQRDIAMSQLVYDALQEQKTRTFGKSEFVFCNSQG
CCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
NPMEYRNVNRRVWKPTLALLGLKHRRAYQTRHTAATLWLAAGENPEWIARQMGHSSTEML
CCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCHHHHH
FRVYSRYVPDITRQDGSAMDNLLLASKEKLTSASNSSEGEALIRDSQTDKETSQ
HHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]