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The map label for this gene is ureD1

Identifier: 93005707

GI number: 93005707

Start: 1042387

End: 1043295

Strand: Direct

Name: ureD1

Synonym: Pcryo_0879

Alternate gene names: 93005707

Gene position: 1042387-1043295 (Clockwise)

Preceding gene: 93005706

Following gene: 93005708

Centisome position: 34.07

GC content: 50.94

Gene sequence:

>909_bases
ATGACGATTTTATTTTCTATGCCTGTGCATCCGCAGCCAATCATAGATTCTGGGCATCGTTTTGATGCCAGCCGCCATTG
GCCAGCCTCATTAACTTTAGGGTTTGCAGCTTATCCTGAAGCGGACACTCGCATTACCCGCATGAATGTCGCACGTCACT
ATGGTCCACTACGGGTACAGCGCGCTTTTTACCCTGAAGGTCGTGATGGCTGCTGTCATGTGTATCTTCTGCATCCACCC
GGCGGTATTGCCAGCGGTGATTCTTTAACCATCGATGTTACGGTGTCTGAAAACGCTCACGCTTTATTAACCACCCCAGC
TGCCAACAAACTGTATCGAGCCGATAGCAATAATGTCGCTTGGACACAGCATACTCATCTCAAAGTCGAAGACGGTGCCA
CGCTTGAATGGCTGCCACAAGAAACGCTGGCTTTTGATGGATCACGCGGTGAGCAAACGGTGATTATTGATTTGGCTGAA
ACGGCTAAATGCTTGGGCTGGGAAATTATTGGCCTTGGCCGCCCAGCCAGCGACTTACCTTATGTCAGCGGCATGATTGA
ACAGCGCTTTCAGCTTAGCCAAAAAGGTCGGCCCCTATGGTTAGAGCGCCAAGCCATTGACCCAACACATCCTCGATTTT
TAGGTAAATGGGGACAAGGCGGCGCTACGGTTCACGCTACTCTGTGGGCTGTCGGACTGAGTGACCCTGCTGACACCATT
ACCGAACTACGCGACAAAATACCTGCCAACCACAATTGGGCGGTGACTTATCGCCGCGGTGTGCTTTTACTTCGCTATTT
GGGCATGGAGCGCAATGAGGCATGGGATTTATTACAACAAGCGAGGGAAATTCTGCGCCCAAGACTGATGGATGTTAAGG
CAGTGACGCCGCGCATTTGGTTAACCTAA

Upstream 100 bases:

>100_bases
CGCACGTGAATGTATTTTCTCATTTTGCTATTGTCAGCCAATTTGCTGACGATTCAGCGATGTATGTCGCGCTGGGCCTA
TAAAAAAGGTTTCCAATCGC

Downstream 100 bases:

>100_bases
TAATTCTTTTGCGTATTTTTTTTCGATTACACATAAAAGCAAGCCACAAATCAATCGGTTTTCAGCTCAATAATAATGGA
GACAATAATGGAATTAACCC

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTILFSMPVHPQPIIDSGHRFDASRHWPASLTLGFAAYPEADTRITRMNVARHYGPLRVQRAFYPEGRDGCCHVYLLHPP
GGIASGDSLTIDVTVSENAHALLTTPAANKLYRADSNNVAWTQHTHLKVEDGATLEWLPQETLAFDGSRGEQTVIIDLAE
TAKCLGWEIIGLGRPASDLPYVSGMIEQRFQLSQKGRPLWLERQAIDPTHPRFLGKWGQGGATVHATLWAVGLSDPADTI
TELRDKIPANHNWAVTYRRGVLLLRYLGMERNEAWDLLQQAREILRPRLMDVKAVTPRIWLT

Sequences:

>Translated_302_residues
MTILFSMPVHPQPIIDSGHRFDASRHWPASLTLGFAAYPEADTRITRMNVARHYGPLRVQRAFYPEGRDGCCHVYLLHPP
GGIASGDSLTIDVTVSENAHALLTTPAANKLYRADSNNVAWTQHTHLKVEDGATLEWLPQETLAFDGSRGEQTVIIDLAE
TAKCLGWEIIGLGRPASDLPYVSGMIEQRFQLSQKGRPLWLERQAIDPTHPRFLGKWGQGGATVHATLWAVGLSDPADTI
TELRDKIPANHNWAVTYRRGVLLLRYLGMERNEAWDLLQQAREILRPRLMDVKAVTPRIWLT
>Mature_301_residues
TILFSMPVHPQPIIDSGHRFDASRHWPASLTLGFAAYPEADTRITRMNVARHYGPLRVQRAFYPEGRDGCCHVYLLHPPG
GIASGDSLTIDVTVSENAHALLTTPAANKLYRADSNNVAWTQHTHLKVEDGATLEWLPQETLAFDGSRGEQTVIIDLAET
AKCLGWEIIGLGRPASDLPYVSGMIEQRFQLSQKGRPLWLERQAIDPTHPRFLGKWGQGGATVHATLWAVGLSDPADTIT
ELRDKIPANHNWAVTYRRGVLLLRYLGMERNEAWDLLQQAREILRPRLMDVKAVTPRIWLT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED1_PSYCK (Q1QCE3)

Other databases:

- EMBL:   CP000323
- RefSeq:   YP_580144.1
- STRING:   Q1QCE3
- GeneID:   4035315
- GenomeReviews:   CP000323_GR
- KEGG:   pcr:Pcryo_0879
- NMPDR:   fig|335284.3.peg.240
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   VQRPLYP
- ProtClustDB:   CLSK717304
- BioCyc:   PCRY335284:PCRYO_0879-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 33864; Mature: 33733

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILFSMPVHPQPIIDSGHRFDASRHWPASLTLGFAAYPEADTRITRMNVARHYGPLRVQ
CEEEEECCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHCCCEEEE
RAFYPEGRDGCCHVYLLHPPGGIASGDSLTIDVTVSENAHALLTTPAANKLYRADSNNVA
EEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCEEECCCCCEE
WTQHTHLKVEDGATLEWLPQETLAFDGSRGEQTVIIDLAETAKCLGWEIIGLGRPASDLP
EEEEEEEEECCCCEEEECCCHHEEECCCCCCEEEEEEEHHHHHHCCEEEEECCCCCCCCC
YVSGMIEQRFQLSQKGRPLWLERQAIDPTHPRFLGKWGQGGATVHATLWAVGLSDPADTI
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCEEEEEEEEEECCCHHHHH
TELRDKIPANHNWAVTYRRGVLLLRYLGMERNEAWDLLQQAREILRPRLMDVKAVTPRIW
HHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEE
LT
EC
>Mature Secondary Structure 
TILFSMPVHPQPIIDSGHRFDASRHWPASLTLGFAAYPEADTRITRMNVARHYGPLRVQ
EEEEECCCCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHCCCEEEE
RAFYPEGRDGCCHVYLLHPPGGIASGDSLTIDVTVSENAHALLTTPAANKLYRADSNNVA
EEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCEEECCCCCEE
WTQHTHLKVEDGATLEWLPQETLAFDGSRGEQTVIIDLAETAKCLGWEIIGLGRPASDLP
EEEEEEEEECCCCEEEECCCHHEEECCCCCCEEEEEEEHHHHHHCCEEEEECCCCCCCCC
YVSGMIEQRFQLSQKGRPLWLERQAIDPTHPRFLGKWGQGGATVHATLWAVGLSDPADTI
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCEEEEEEEEEECCCHHHHH
TELRDKIPANHNWAVTYRRGVLLLRYLGMERNEAWDLLQQAREILRPRLMDVKAVTPRIW
HHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEE
LT
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA