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The map label for this gene is 93005656

Identifier: 93005656

GI number: 93005656

Start: 976604

End: 977872

Strand: Reverse

Name: 93005656

Synonym: Pcryo_0826

Alternate gene names: NA

Gene position: 977872-976604 (Counterclockwise)

Preceding gene: 93005657

Following gene: 93005655

Centisome position: 31.96

GC content: 44.6

Gene sequence:

>1269_bases
ATGGCAACCATCAATTATGAACGACTACAAGGTAAGCTCAATATTTTAGCGGACGCTGCTAAGTATGATGTCTCTTGCTC
ATCCTCCGCTGGTACGCGGAAAAACCAAGGCGGTGGCCTTGGCGATGCCTCAGCAACCGGTATTTGTCACAGCTATACCG
AAGATGGTCGCTGCGTTAGCCTGCTGAAAATCCTGCTGACCAATCATTGCATATATGATTGCGCTTATTGCACCTCGCGT
AAAAGCAATGACACCCCGCGCGCTGCTTTTAGTGTTGAAGAAGTGGTTGATTTAACTATGCAGTTTTACCGCCGTAACTA
TATCGAAGGGCTGTTTCTCAGCTCAGGTATTTTTAAAAGTGGCGATTATACGATGGAGCGATTGGTCGAGGTTGCAAAGA
TATTGCGTACCCGTGAGCGTTTTAATGGTTATATTCATCTAAAGACCATTCCCGGAGCTTCAAAAGAATTATTATTAGAA
GCTGGATTATATGCTGACCGTTTAAGCGTCAATATCGAAATTCCGACTAAATCAGGATTGGCGTTACTGGCACCAGAAAA
ATCTCACGAACAATTAAAAGCACCGATGGAGACGGTCAAAGAAGAAATCATCACCATTCGTGAGAGCCGTAAAACGCATA
AAAAAGCGCCGAAATTTGTGCCTGCAGGTCAGACTAGCCAGATGATTGTTGGCGCAAGTAACGAGACCGACTTGCAAGTG
ATTCAGCTATCGAGTCATTTTTATAAACACTATGATTTAAAACGAGTTTACTATTCTGGCTATGTGCCAATGCTATCTGA
CAGTCGCCTGCCAGCTATCGGTACGCCTGTGCCAATGATACGCGAAAACCGTCTCTATCAAGCGGATTGGCTGATGCGTT
TTTATGGTTTTGGCGCGCACGAAATCGTTGAACCGGACTCGCCATTTTTAGATTTGGACTGCGACCCAAAGTTAGCATGG
GCAATCCGCCACCGTGATCATTTTCCGGTCAATATCCAAACAGCAAGTTATGAGATGATTGTCCGTATTCCCGGTATCGG
TACAAAAACGGCTAAAAAAATAGTCAAAGCCCGCAAGTTTAATCAGCTCACACTTTATCACTTGAAGAAAATGGGCGCGG
CGGTCAATCGCGCCAAATACTTCATTGCAACTACTGGTAAAAACGAGCATCTCGCACACTTAACCTGTGACAACTTTCGT
CAATATGTGCTGGCGCAAACGCAGACGAAATTTAAAGATCAACGCAGTGGACAGTTGGCTTTGTTTTAA

Upstream 100 bases:

>100_bases
ACAGTTGTCGTCTATCATTGATATTTTACTCATAAATACAATGACTTACCGATAATTTTGCTAAAATAGTCTTTCATTAC
TGACATGGTAAATACCGCTT

Downstream 100 bases:

>100_bases
ATATCAAAATTATTGATAATTTAGCTACTATCATGAAGTTATCTTAGGACAAATAATGTCGCAATCACTGTCAGAACTTG
TCAAAAACCAAAATTACCAG

Product: radical SAM family protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical SAM Family Protein; Elongator /MiaB/NifB; Radical Sam Domain Protein; Radical SAM; Radical SAM Superfamily Protein; Biotin Synthase Related Domain-Containing Protein; Biotin Synthase Related Domain Containing Protein; Elongator Protein; Radical SAM Methylase Protein; Helix-Hairpin-Helix Motif; Radical SAM Protein

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MATINYERLQGKLNILADAAKYDVSCSSSAGTRKNQGGGLGDASATGICHSYTEDGRCVSLLKILLTNHCIYDCAYCTSR
KSNDTPRAAFSVEEVVDLTMQFYRRNYIEGLFLSSGIFKSGDYTMERLVEVAKILRTRERFNGYIHLKTIPGASKELLLE
AGLYADRLSVNIEIPTKSGLALLAPEKSHEQLKAPMETVKEEIITIRESRKTHKKAPKFVPAGQTSQMIVGASNETDLQV
IQLSSHFYKHYDLKRVYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAHEIVEPDSPFLDLDCDPKLAW
AIRHRDHFPVNIQTASYEMIVRIPGIGTKTAKKIVKARKFNQLTLYHLKKMGAAVNRAKYFIATTGKNEHLAHLTCDNFR
QYVLAQTQTKFKDQRSGQLALF

Sequences:

>Translated_422_residues
MATINYERLQGKLNILADAAKYDVSCSSSAGTRKNQGGGLGDASATGICHSYTEDGRCVSLLKILLTNHCIYDCAYCTSR
KSNDTPRAAFSVEEVVDLTMQFYRRNYIEGLFLSSGIFKSGDYTMERLVEVAKILRTRERFNGYIHLKTIPGASKELLLE
AGLYADRLSVNIEIPTKSGLALLAPEKSHEQLKAPMETVKEEIITIRESRKTHKKAPKFVPAGQTSQMIVGASNETDLQV
IQLSSHFYKHYDLKRVYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAHEIVEPDSPFLDLDCDPKLAW
AIRHRDHFPVNIQTASYEMIVRIPGIGTKTAKKIVKARKFNQLTLYHLKKMGAAVNRAKYFIATTGKNEHLAHLTCDNFR
QYVLAQTQTKFKDQRSGQLALF
>Mature_421_residues
ATINYERLQGKLNILADAAKYDVSCSSSAGTRKNQGGGLGDASATGICHSYTEDGRCVSLLKILLTNHCIYDCAYCTSRK
SNDTPRAAFSVEEVVDLTMQFYRRNYIEGLFLSSGIFKSGDYTMERLVEVAKILRTRERFNGYIHLKTIPGASKELLLEA
GLYADRLSVNIEIPTKSGLALLAPEKSHEQLKAPMETVKEEIITIRESRKTHKKAPKFVPAGQTSQMIVGASNETDLQVI
QLSSHFYKHYDLKRVYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAHEIVEPDSPFLDLDCDPKLAWA
IRHRDHFPVNIQTASYEMIVRIPGIGTKTAKKIVKARKFNQLTLYHLKKMGAAVNRAKYFIATTGKNEHLAHLTCDNFRQ
YVLAQTQTKFKDQRSGQLALF

Specific function: Unknown

COG id: COG4277

COG function: function code R; Predicted DNA-binding protein with the Helix-hairpin-helix motif

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47629; Mature: 47498

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00260 GLUCAGON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATINYERLQGKLNILADAAKYDVSCSSSAGTRKNQGGGLGDASATGICHSYTEDGRCVS
CCCCCHHHHHCHHHEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH
LLKILLTNHCIYDCAYCTSRKSNDTPRAAFSVEEVVDLTMQFYRRNYIEGLFLSSGIFKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
GDYTMERLVEVAKILRTRERFNGYIHLKTIPGASKELLLEAGLYADRLSVNIEIPTKSGL
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEEEEEEECCCCCE
ALLAPEKSHEQLKAPMETVKEEIITIRESRKTHKKAPKFVPAGQTSQMIVGASNETDLQV
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEEE
IQLSSHFYKHYDLKRVYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAH
EEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCH
EIVEPDSPFLDLDCDPKLAWAIRHRDHFPVNIQTASYEMIVRIPGIGTKTAKKIVKARKF
HCCCCCCCEEECCCCCCEEEEEECCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHC
NQLTLYHLKKMGAAVNRAKYFIATTGKNEHLAHLTCDNFRQYVLAQTQTKFKDQRSGQLA
CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEE
LF
CC
>Mature Secondary Structure 
ATINYERLQGKLNILADAAKYDVSCSSSAGTRKNQGGGLGDASATGICHSYTEDGRCVS
CCCCHHHHHCHHHEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH
LLKILLTNHCIYDCAYCTSRKSNDTPRAAFSVEEVVDLTMQFYRRNYIEGLFLSSGIFKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
GDYTMERLVEVAKILRTRERFNGYIHLKTIPGASKELLLEAGLYADRLSVNIEIPTKSGL
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEEEEEEECCCCCE
ALLAPEKSHEQLKAPMETVKEEIITIRESRKTHKKAPKFVPAGQTSQMIVGASNETDLQV
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEEE
IQLSSHFYKHYDLKRVYYSGYVPMLSDSRLPAIGTPVPMIRENRLYQADWLMRFYGFGAH
EEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCH
EIVEPDSPFLDLDCDPKLAWAIRHRDHFPVNIQTASYEMIVRIPGIGTKTAKKIVKARKF
HCCCCCCCEEECCCCCCEEEEEECCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHC
NQLTLYHLKKMGAAVNRAKYFIATTGKNEHLAHLTCDNFRQYVLAQTQTKFKDQRSGQLA
CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEE
LF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA