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The map label for this gene is ygcF [C]

Identifier: 93005554

GI number: 93005554

Start: 852605

End: 853339

Strand: Reverse

Name: ygcF [C]

Synonym: Pcryo_0724

Alternate gene names: 93005554

Gene position: 853339-852605 (Counterclockwise)

Preceding gene: 93005555

Following gene: 93005553

Centisome position: 27.89

GC content: 46.26

Gene sequence:

>735_bases
ATGAGTGAGTTATCTTTACGCACCGCTGCTATCCCTGTCACTGACCCTGAAGCAGGGTTACGTTTAACGGAGATTTTTTA
TTCTTTGCAAGGTGAGGCACTGAATTCAGGTTTACCAACGATATTTGTACGCTTGACCGGCTGCCCGCTACGTTGCGTTT
ACTGCGATACCGAATATGCCTTTAGTGGCGGCGAACGTCAGTCGCTTGAGACTATTATGGCGACTATTGCCAGCTTCCCT
TGTAAGCGTATTTGCTTAACCGGTGGTGAGCCTTTAGCCCAGCCTAACGCTATTGAATTGATGAAGCGTCTGCTCAATGA
GGGTTATGAGATTTCTCTTGAAACGGCAGGGGCACTGACGGTCGAAAATGTCCCGCCAGCGGTCAGCAAAGTGATGGATT
TAAAAACCCCAAGCTCAGGTGAAGTTGATAAGAATCTTTGGTCAAACCTCGATTACCTCACTCAACATGACCAAATAAAA
TTTGTCATCATGAATCGCACCGATTATGACTGGGCAAAAGCAAAGCTTATCGACTATAAGCTAAATGACTTGGTCGGTAC
GGTATGGTTTTCACCGATGTTTAATGTGGCACATGAAGATACGGCAAACGATAATAGCCCAGAAGTGCCAGTACTCGCAC
GTGAGCTTGCCGAATGGATGTTAACCGACGCCCTACCCGTACGTTTTCAATTGCAACTACATAAGATTATTTGGGCGGAT
GCCAAGGGCAAATAG

Upstream 100 bases:

>100_bases
TCTGGGCGCTGAACTTCCGAGCATTAAACAGATTCTTAAACCTTTTTTATTTGATATGTGCTCGATGGCACAATCAATCC
TTAACTGTATTTGAAATATT

Downstream 100 bases:

>100_bases
TCTCTAAAATCTGAATGGATTCTCAAATAAATAGCAAGCCAAGGAAGAAAGGGACAGCTATGGTCAAACTCATTTTATTG
GGCTTATTAGCGGGCGCGTT

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSELSLRTAAIPVTDPEAGLRLTEIFYSLQGEALNSGLPTIFVRLTGCPLRCVYCDTEYAFSGGERQSLETIMATIASFP
CKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGALTVENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIK
FVIMNRTDYDWAKAKLIDYKLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKIIWAD
AKGK

Sequences:

>Translated_244_residues
MSELSLRTAAIPVTDPEAGLRLTEIFYSLQGEALNSGLPTIFVRLTGCPLRCVYCDTEYAFSGGERQSLETIMATIASFP
CKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGALTVENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIK
FVIMNRTDYDWAKAKLIDYKLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKIIWAD
AKGK
>Mature_243_residues
SELSLRTAAIPVTDPEAGLRLTEIFYSLQGEALNSGLPTIFVRLTGCPLRCVYCDTEYAFSGGERQSLETIMATIASFPC
KRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGALTVENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKF
VIMNRTDYDWAKAKLIDYKLNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKIIWADA
KGK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=126, Percent_Identity=29.3650793650794, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27186; Mature: 27055

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELSLRTAAIPVTDPEAGLRLTEIFYSLQGEALNSGLPTIFVRLTGCPLRCVYCDTEYA
CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHCCCCEEEEEECCCCEEEEEECCHHH
FSGGERQSLETIMATIASFPCKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGALT
CCCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEE
VENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRTDYDWAKAKLIDYK
ECCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHEEEEEH
LNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKIIWAD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEC
AKGK
CCCC
>Mature Secondary Structure 
SELSLRTAAIPVTDPEAGLRLTEIFYSLQGEALNSGLPTIFVRLTGCPLRCVYCDTEYA
CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHCCCCEEEEEECCCCEEEEEECCHHH
FSGGERQSLETIMATIASFPCKRICLTGGEPLAQPNAIELMKRLLNEGYEISLETAGALT
CCCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCEEE
VENVPPAVSKVMDLKTPSSGEVDKNLWSNLDYLTQHDQIKFVIMNRTDYDWAKAKLIDYK
ECCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHEEEEEH
LNDLVGTVWFSPMFNVAHEDTANDNSPEVPVLARELAEWMLTDALPVRFQLQLHKIIWAD
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEC
AKGK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]