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The map label for this gene is ygfZ [C]

Identifier: 93005000

GI number: 93005000

Start: 199408

End: 200175

Strand: Reverse

Name: ygfZ [C]

Synonym: Pcryo_0169

Alternate gene names: 93005000

Gene position: 200175-199408 (Counterclockwise)

Preceding gene: 93005003

Following gene: 93004999

Centisome position: 6.54

GC content: 43.88

Gene sequence:

>768_bases
ATGACTCAATCTATCAATACGGCGGCATTGCCACAGTTTTCCCAATTATCTATCCAAGGCGAGGATGCCGAAAAATTTTT
GCAAGGACAATTAACTTGTGATGTCACTAAGCTCGGTCTTAGCTATCAAGCCGCAGCCATTGGGAATTTAAAAGGTCGTA
TAGAATTCGGTATTTGGATTAAAAAACAAGCGGAAAAGCATTTTGACATGGTCATCAGTGCAGATTGCGCTGAGGCTTTC
CAAGGACATTTAAAAAAATTCGGTGCCTTTTCAAAGTGTGATACTAGTGCCCCGACACCTATTTATCCTTGTGTTATTGA
TGAAGTGCCGACTTTTAGCCATCAGGACGACCACAATACATCTAAGAATATTCAAGCTTGGATGCAGTCTAGTATCGCAA
CTGGTAACTATTGGATAGTAGCGGCAACGCAAGGCGAATTCCAACCACAAGAGTTGCGTCTGCATCAGCGCGGCGGCATG
GATTACGATAAAGGCTGTTATTTGGGTCAAGAAGTCATCGCCCGTATTTACTTTAAATCAGCGCCGAAAGCGTTTTTGCA
CTATGTAAAAGGAACAAGTGTAAAAGGCTCAGGTACGACTCCTGTCGCTGGTGAAAAACTGGATAAAGTACAAGTCGTCA
ATGCGATTACTACTAGTGAAGGCTTTGAGGCATTGGTCGTGGCTCGTCCAGAACAGTTGGCTGAAAGTAGTCTGACCATA
TTGGACTTACCATTGGCGCTACAAGCGGATGTTGCTCGCCCTAAGTAA

Upstream 100 bases:

>100_bases
ATTGTTTATCTTGGCATAAAAATCTGGGCTATCATTTTTTGATACTTATTCTTAACATTTAGTGCTTTATAAAAAACCTC
TTTTCAGAAGGATAATAACA

Downstream 100 bases:

>100_bases
TACCAGATAACAACGCTCTCATCTAATTTCATCAATCGCAGCAGAGTAATCTATGACCCATATTGCGGTACTCGGAGCAG
GCGTGGTGGGCGTGACCACC

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTQSINTAALPQFSQLSIQGEDAEKFLQGQLTCDVTKLGLSYQAAAIGNLKGRIEFGIWIKKQAEKHFDMVISADCAEAF
QGHLKKFGAFSKCDTSAPTPIYPCVIDEVPTFSHQDDHNTSKNIQAWMQSSIATGNYWIVAATQGEFQPQELRLHQRGGM
DYDKGCYLGQEVIARIYFKSAPKAFLHYVKGTSVKGSGTTPVAGEKLDKVQVVNAITTSEGFEALVVARPEQLAESSLTI
LDLPLALQADVARPK

Sequences:

>Translated_255_residues
MTQSINTAALPQFSQLSIQGEDAEKFLQGQLTCDVTKLGLSYQAAAIGNLKGRIEFGIWIKKQAEKHFDMVISADCAEAF
QGHLKKFGAFSKCDTSAPTPIYPCVIDEVPTFSHQDDHNTSKNIQAWMQSSIATGNYWIVAATQGEFQPQELRLHQRGGM
DYDKGCYLGQEVIARIYFKSAPKAFLHYVKGTSVKGSGTTPVAGEKLDKVQVVNAITTSEGFEALVVARPEQLAESSLTI
LDLPLALQADVARPK
>Mature_254_residues
TQSINTAALPQFSQLSIQGEDAEKFLQGQLTCDVTKLGLSYQAAAIGNLKGRIEFGIWIKKQAEKHFDMVISADCAEAFQ
GHLKKFGAFSKCDTSAPTPIYPCVIDEVPTFSHQDDHNTSKNIQAWMQSSIATGNYWIVAATQGEFQPQELRLHQRGGMD
YDKGCYLGQEVIARIYFKSAPKAFLHYVKGTSVKGSGTTPVAGEKLDKVQVVNAITTSEGFEALVVARPEQLAESSLTIL
DLPLALQADVARPK

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435 [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=249, Percent_Identity=26.9076305220884, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 27874; Mature: 27743

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSINTAALPQFSQLSIQGEDAEKFLQGQLTCDVTKLGLSYQAAAIGNLKGRIEFGIWI
CCCCCCCHHCCCCHHEEECCCCHHHHHCCCCEEEEEHHCCCEEEEEECCCCCEEEEEEEE
KKQAEKHFDMVISADCAEAFQGHLKKFGAFSKCDTSAPTPIYPCVIDEVPTFSHQDDHNT
EHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
SKNIQAWMQSSIATGNYWIVAATQGEFQPQELRLHQRGGMDYDKGCYLGQEVIARIYFKS
HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
APKAFLHYVKGTSVKGSGTTPVAGEKLDKVQVVNAITTSEGFEALVVARPEQLAESSLTI
CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEEECCHHHHHCCCEE
LDLPLALQADVARPK
EECCHHEECCCCCCC
>Mature Secondary Structure 
TQSINTAALPQFSQLSIQGEDAEKFLQGQLTCDVTKLGLSYQAAAIGNLKGRIEFGIWI
CCCCCCHHCCCCHHEEECCCCHHHHHCCCCEEEEEHHCCCEEEEEECCCCCEEEEEEEE
KKQAEKHFDMVISADCAEAFQGHLKKFGAFSKCDTSAPTPIYPCVIDEVPTFSHQDDHNT
EHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
SKNIQAWMQSSIATGNYWIVAATQGEFQPQELRLHQRGGMDYDKGCYLGQEVIARIYFKS
HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
APKAFLHYVKGTSVKGSGTTPVAGEKLDKVQVVNAITTSEGFEALVVARPEQLAESSLTI
CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCEEEEEECCHHHHHCCCEE
LDLPLALQADVARPK
EECCHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]