Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 92115424

GI number: 92115424

Start: 3686226

End: 3686906

Strand: Direct

Name: yiaD [H]

Synonym: Csal_3309

Alternate gene names: 92115424

Gene position: 3686226-3686906 (Clockwise)

Preceding gene: 92115423

Following gene: 92115425

Centisome position: 99.72

GC content: 66.37

Gene sequence:

>681_bases
ATGCAACGCTCGATATGGATGGCGGTACCGCTGGCCTTGGCAATCGGTGTCACGGGGTGTGCCAGCAACGGGACGCAGAC
CGGTCAGCAGCAAGGCGATCATGGCAAGACCTTTGGTGGCGCCGGCATTGGGGCCGCCGTGGGCGCGGTTGCCGGGGCAT
TGACCGGCGACGGCAGCACCAGCCGTCGCGACCGTGCGTTGATCGGGGCCGCGGCGGGCGCCGCCATCGGCGGTGGGGTC
GGCGCCTACATGGATGCCCAGGAAGAAAAGCTGCGCAGGGATCTTGATGGAACCGGCATCGGCGTCGATCGCCAGGGCGA
CAACATCGTCCTCAACATGCCCAGCAGCGTGACCTTCGACGTCGATTCCAGCGCATTGAAGACGCCCGCGCGTCAGGCCC
TCAACGATGCCACGGCCGTCATGCGCGAGTACCCCAAGACACGCATCAACGTCGCCGGGTACACCGACAGCACCGGTAGC
GCCGATTACAATCAGCGCCTCTCCGAGCGCCGGGCTCAGGCCGTTGCCGACTACCTCGGCCAGGGAGGCATCGCCGCCAA
CCGCATCAACACGGTTGGCTACGGCGAACGTCAGCCGGTGGCCAGCAACGATACCGAAAGCGGCCGCGCGCAGAATCGGC
GTGTCGAAATCACGCTGACGCCGGTCACTCAGCAAGGCTGA

Upstream 100 bases:

>100_bases
GGTTGTTGTTCTTGAACGACCTGCTCGCGCTTTGCGACGCAGCGTGACGACGCGCAACCATCGGAACGCACTCACAGGAA
AAGGTAAGGAGAAAGGACGC

Downstream 100 bases:

>100_bases
ATCGGCGTCCTTGCCGCCCCGGGCCTTTGCGCCTCGCCCGGGGCGGCGCGATTTCCCCGTATGGCGGGGAACGGCGTATC
ATGGTCCCGCCACGATGTTC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MQRSIWMAVPLALAIGVTGCASNGTQTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGSTSRRDRALIGAAAGAAIGGGV
GAYMDAQEEKLRRDLDGTGIGVDRQGDNIVLNMPSSVTFDVDSSALKTPARQALNDATAVMREYPKTRINVAGYTDSTGS
ADYNQRLSERRAQAVADYLGQGGIAANRINTVGYGERQPVASNDTESGRAQNRRVEITLTPVTQQG

Sequences:

>Translated_226_residues
MQRSIWMAVPLALAIGVTGCASNGTQTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGSTSRRDRALIGAAAGAAIGGGV
GAYMDAQEEKLRRDLDGTGIGVDRQGDNIVLNMPSSVTFDVDSSALKTPARQALNDATAVMREYPKTRINVAGYTDSTGS
ADYNQRLSERRAQAVADYLGQGGIAANRINTVGYGERQPVASNDTESGRAQNRRVEITLTPVTQQG
>Mature_226_residues
MQRSIWMAVPLALAIGVTGCASNGTQTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGSTSRRDRALIGAAAGAAIGGGV
GAYMDAQEEKLRRDLDGTGIGVDRQGDNIVLNMPSSVTFDVDSSALKTPARQALNDATAVMREYPKTRINVAGYTDSTGS
ADYNQRLSERRAQAVADYLGQGGIAANRINTVGYGERQPVASNDTESGRAQNRRVEITLTPVTQQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=226, Percent_Identity=46.9026548672566, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=38.3333333333333, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786962, Length=179, Percent_Identity=28.4916201117318, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788957, Length=111, Percent_Identity=34.2342342342342, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23272; Mature: 23272

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSIWMAVPLALAIGVTGCASNGTQTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGST
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
SRRDRALIGAAAGAAIGGGVGAYMDAQEEKLRRDLDGTGIGVDRQGDNIVLNMPSSVTFD
CCHHHHHHHHHHCHHHCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEE
VDSSALKTPARQALNDATAVMREYPKTRINVAGYTDSTGSADYNQRLSERRAQAVADYLG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
QGGIAANRINTVGYGERQPVASNDTESGRAQNRRVEITLTPVTQQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MQRSIWMAVPLALAIGVTGCASNGTQTGQQQGDHGKTFGGAGIGAAVGAVAGALTGDGST
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
SRRDRALIGAAAGAAIGGGVGAYMDAQEEKLRRDLDGTGIGVDRQGDNIVLNMPSSVTFD
CCHHHHHHHHHHCHHHCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEE
VDSSALKTPARQALNDATAVMREYPKTRINVAGYTDSTGSADYNQRLSERRAQAVADYLG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC
QGGIAANRINTVGYGERQPVASNDTESGRAQNRRVEITLTPVTQQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]