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The map label for this gene is yggW [H]

Identifier: 92115423

GI number: 92115423

Start: 3685000

End: 3686172

Strand: Direct

Name: yggW [H]

Synonym: Csal_3308

Alternate gene names: 92115423

Gene position: 3685000-3686172 (Clockwise)

Preceding gene: 92115422

Following gene: 92115424

Centisome position: 99.68

GC content: 64.54

Gene sequence:

>1173_bases
ATGAGCATGCCGCTGCCGCCACTGTCCCTGTATGTGCATGTGCCCTGGTGCGTGCGCAAATGTCCGTATTGCGATTTCAA
CTCCCATGGCATGGACCCGGACCGGGCGCTCCCCGAGACAGCCTACGTCGAGGCCCTGCTCGCCGACCTGGACGCGGATG
CAGCGCTGGCCGACGGCCGTGAGCTGGTGAGCATCTTCGTCGGGGGCGGCACGCCCAGTCTGTTGAGCGGTGATGCGTAC
CGACACTTGCTGCAAGGGATACGTGCGCGTCTGCCGTTCGCGTCGGATATCGAAATCACTCTGGAAGCCAATCCCGGCAC
CGTCGAGCATGACCGTTTCGCGGCCTATCGTGAGGCGGGCATCAACCGTCTGTCGCTGGGAGTGCAGAGCTTTCAGGCGC
CGCAACTCGAGGTCCTGGGGCGCATCCACAGCGGCGAGGAAGCCGCCCAGGCCATGCAGGACGCACGCCACGCCGGGTTC
GATAACATCAACCTCGACCTGATGCATGGGCTGCCCGGTCAGGATGAGGCGCTGGCGCTGGCGGATATCGACCGTGCCCT
GGCGCTGGCCCCCGATCATCTCTCCTGGTACCAGCTGACGCTGGAGCCCAACACGCAGTTCTATTCACATCCGCCGCGAT
TGCCCGACGAGGATACGCTGTGCGATATCCAGGAAGCGGGACATGCGCGCATCGAGGCCGCAGGTTATCAACGCTACGAG
ATTTCCGCCTATGCCACGCCCGGACGGCAGGCGCGGCACAACCTCAACTACTGGACGTTCGGCGATTACCTGGGCATCGG
CGCGGGCGCGCACGGCAAGTTGAGTGCCTGGCAGCCGGACGGTAGTCTAGCCATCGAGCGTCGCTGGAAGGTACGGCAGC
CACAGGCGTATCTGCGTCGTGCCCAGGATCCGCGTGGTTTCATCGCGGGGCGGCGTGCGCTCGAGGAACAGGAATTGCCG
CTGGAATTCTTGATGAACGCGCTGCGCCTCACCCAGGGCGTGCCACGCCGTTACTGGCACGAACGCAGCGGGCTAGCTGA
TACACTGCTCGACGCGCGGCTCGAACAGGCGCATGCCAAGGGGCTGTTGTGCGATCCCTCGCAACGCCTGCAGGCATCGC
CGCATGGGTTGTTGTTCTTGAACGACCTGCTCGCGCTTTGCGACGCAGCGTGA

Upstream 100 bases:

>100_bases
GCGCCATGACCGCCGCAGAGTTGTCCGCCGAGGACAAGAACCGACTCAGCCATCGCGGCAGGGCCATGCAGGCCCTGCTG
GCGCAGCTCTCCGCGCCCTC

Downstream 100 bases:

>100_bases
CGACGCGCAACCATCGGAACGCACTCACAGGAAAAGGTAAGGAGAAAGGACGCATGCAACGCTCGATATGGATGGCGGTA
CCGCTGGCCTTGGCAATCGG

Product: coproporphyrinogen III oxidase, anaerobic

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSMPLPPLSLYVHVPWCVRKCPYCDFNSHGMDPDRALPETAYVEALLADLDADAALADGRELVSIFVGGGTPSLLSGDAY
RHLLQGIRARLPFASDIEITLEANPGTVEHDRFAAYREAGINRLSLGVQSFQAPQLEVLGRIHSGEEAAQAMQDARHAGF
DNINLDLMHGLPGQDEALALADIDRALALAPDHLSWYQLTLEPNTQFYSHPPRLPDEDTLCDIQEAGHARIEAAGYQRYE
ISAYATPGRQARHNLNYWTFGDYLGIGAGAHGKLSAWQPDGSLAIERRWKVRQPQAYLRRAQDPRGFIAGRRALEEQELP
LEFLMNALRLTQGVPRRYWHERSGLADTLLDARLEQAHAKGLLCDPSQRLQASPHGLLFLNDLLALCDAA

Sequences:

>Translated_390_residues
MSMPLPPLSLYVHVPWCVRKCPYCDFNSHGMDPDRALPETAYVEALLADLDADAALADGRELVSIFVGGGTPSLLSGDAY
RHLLQGIRARLPFASDIEITLEANPGTVEHDRFAAYREAGINRLSLGVQSFQAPQLEVLGRIHSGEEAAQAMQDARHAGF
DNINLDLMHGLPGQDEALALADIDRALALAPDHLSWYQLTLEPNTQFYSHPPRLPDEDTLCDIQEAGHARIEAAGYQRYE
ISAYATPGRQARHNLNYWTFGDYLGIGAGAHGKLSAWQPDGSLAIERRWKVRQPQAYLRRAQDPRGFIAGRRALEEQELP
LEFLMNALRLTQGVPRRYWHERSGLADTLLDARLEQAHAKGLLCDPSQRLQASPHGLLFLNDLLALCDAA
>Mature_389_residues
SMPLPPLSLYVHVPWCVRKCPYCDFNSHGMDPDRALPETAYVEALLADLDADAALADGRELVSIFVGGGTPSLLSGDAYR
HLLQGIRARLPFASDIEITLEANPGTVEHDRFAAYREAGINRLSLGVQSFQAPQLEVLGRIHSGEEAAQAMQDARHAGFD
NINLDLMHGLPGQDEALALADIDRALALAPDHLSWYQLTLEPNTQFYSHPPRLPDEDTLCDIQEAGHARIEAAGYQRYEI
SAYATPGRQARHNLNYWTFGDYLGIGAGAHGKLSAWQPDGSLAIERRWKVRQPQAYLRRAQDPRGFIAGRRALEEQELPL
EFLMNALRLTQGVPRRYWHERSGLADTLLDARLEQAHAKGLLCDPSQRLQASPHGLLFLNDLLALCDAA

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=295, Percent_Identity=35.5932203389831, Blast_Score=185, Evalue=8e-47,
Organism=Escherichia coli, GI1789325, Length=389, Percent_Identity=53.9845758354756, Blast_Score=401, Evalue=1e-113,
Organism=Escherichia coli, GI87082341, Length=283, Percent_Identity=31.4487632508834, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43223; Mature: 43092

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPLPPLSLYVHVPWCVRKCPYCDFNSHGMDPDRALPETAYVEALLADLDADAALADGR
CCCCCCCCEEEEECCHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHCCC
ELVSIFVGGGTPSLLSGDAYRHLLQGIRARLPFASDIEITLEANPGTVEHDRFAAYREAG
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
INRLSLGVQSFQAPQLEVLGRIHSGEEAAQAMQDARHAGFDNINLDLMHGLPGQDEALAL
CCEEHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEH
ADIDRALALAPDHLSWYQLTLEPNTQFYSHPPRLPDEDTLCDIQEAGHARIEAAGYQRYE
HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECHHHCCCCEEEECCCEEEE
ISAYATPGRQARHNLNYWTFGDYLGIGAGAHGKLSAWQPDGSLAIERRWKVRQPQAYLRR
EEEECCCCHHHHHCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCHHHHHH
AQDPRGFIAGRRALEEQELPLEFLMNALRLTQGVPRRYWHERSGLADTLLDARLEQAHAK
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHC
GLLCDPSQRLQASPHGLLFLNDLLALCDAA
CCEECCHHHHCCCCCCEEHHHHHHHHHCCC
>Mature Secondary Structure 
SMPLPPLSLYVHVPWCVRKCPYCDFNSHGMDPDRALPETAYVEALLADLDADAALADGR
CCCCCCCEEEEECCHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCHHHHCCC
ELVSIFVGGGTPSLLSGDAYRHLLQGIRARLPFASDIEITLEANPGTVEHDRFAAYREAG
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
INRLSLGVQSFQAPQLEVLGRIHSGEEAAQAMQDARHAGFDNINLDLMHGLPGQDEALAL
CCEEHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEH
ADIDRALALAPDHLSWYQLTLEPNTQFYSHPPRLPDEDTLCDIQEAGHARIEAAGYQRYE
HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECHHHCCCCEEEECCCEEEE
ISAYATPGRQARHNLNYWTFGDYLGIGAGAHGKLSAWQPDGSLAIERRWKVRQPQAYLRR
EEEECCCCHHHHHCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCHHHHHH
AQDPRGFIAGRRALEEQELPLEFLMNALRLTQGVPRRYWHERSGLADTLLDARLEQAHAK
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHC
GLLCDPSQRLQASPHGLLFLNDLLALCDAA
CCEECCHHHHCCCCCCEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]