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The map label for this gene is yddU [C]

Identifier: 92115378

GI number: 92115378

Start: 3636937

End: 3638946

Strand: Direct

Name: yddU [C]

Synonym: Csal_3263

Alternate gene names: 92115378

Gene position: 3636937-3638946 (Clockwise)

Preceding gene: 92115369

Following gene: 92115384

Centisome position: 98.38

GC content: 64.68

Gene sequence:

>2010_bases
ATGAGCCACTCGGCCTTTCGGCGCAACCGGGCGAATCGAGCGTCGGCGCGACGTCGCCTTGTGCTAACGTTCCTAGCACC
GGGATGCCTGCATGGCAGTGCTCAGGCGCTCCCACCCGCCTGCTTGCATGACGCCGGGCCCGGCATCGCGACGAGAGAAC
ACTGCATGGTCAATGTCCCGGGGGTCGCTGCCCCCGATCATCCCGATGAAACGCGTCGCCTCGACGAGCTGCACCGCCTG
GGGTTGATGGATACCCCGCCCGAGAAGCGTTTCGACGACATCACCCGGCTGGCCGCCCGAGTCTTCGGCGTGCCCATTGT
GCTGATCACACTGGTTGACCGCCACCGTCAGTGGTTCAAGTCGCGTTTCGGCATTGATGCCTGTGAAACGTCCCGCGACA
ACGCCTTTTGCGCGCACGCCTTGCTGGAACGCAAGCTGCTGGTGATCGAGGATACCACCCGGGATGCGCGTTTCCGTGAC
CATCCGCTGGTCACCGAGACGCCTTACATTCGCTTTTATGCCGGCGCCGTCATTCGCACGGCCGCGGGGCTGCCACTGGG
CACGCTGTGCCTGATCGATCGCCATCCACGCCATTTCGATGCCTCCCAGCGCGAGATATTGCTCGATCTCGCCCGACTGG
TGGAGAACGAAATCGGCGACGATGCCATCATGCGGCTGGAACGCGCACGCGCGGAGATCGGCACGCAATTCGATCCGCAA
ACTCGCCTGGCCACGCAGCAGCGCTTTCAACAACTCATCGAGGCGCGTCTGAACGCGCTCTCCGACGACGACACCCTGTG
CGGCGTGGCGGCCGTCGATCTCTACGGCATGCGCGCGATACGCACGCGCTTCTCGCTCCAGGTCAGCAACAATGTCCTGA
TGCGATGCATCGCCCGGGTCGAGAAGGCTCTGGACGGATTCGTCTTCGACCTGGCGCGTATCGATGACCAGCGCCTGGGC
GTCCTGCTCTATCGCGGCGACGCCACACGCATGGCTGCCACCATGGAGGCACTGGCCACCACGCTGCGCGCGCCCTACAT
CGCCGCCGGCAAGACGGTCACCGCGGCCGCTCGCGTGGTCTGGGCCCATGATGCCCCCCGGCTTGGCCATGCCGACGACA
TTCTCTCCGCCTTGCAGCATACCTGCCGCCGGCTCCACAGCGAACGCGGCGCCGACCTGTTTCGTCTCGATACGCCCGAG
GTCCTGCCGCGTCTGACGCGCCGCAATCTGTTGCGTCGACGCACCGCCTCGGCTCTGGCCGAGGATCGCTTCTGTCTGCA
CTATCAACCCCAGGTCAGCGTGCGCGACTTTCGCGTGCACGGCTTCGAGGCGTTGCTGCGCTGGCACGATACAGAATTGG
GGTGGGTCAACCCTCAGGATATCGTCGACATCGCCGAAGAAATCGATCTCGGCGATCAACTGGATATCTGGGTCTTGCGG
CGGGTCATGCGACAGCTTTCCGTATGGCGGGATCGCGGGCACGACGTGTTGCCGGTGGCGCTCAATATCTCGCAGGAACA
GCTCGCCCGGCCTGCCTTCGCCGACCGGTTCTGCGCATTGCTTGCCCAATACCGCTTGCCGGGCCGCCTGCTCAAGCTGG
AAGTACTGGAACGCTCGCTGATCGACGACCCCGAGGCCATCATCGAGAGCATGCAACGCCTCAAGCGTCATGGCGTGGGC
TTCGCCATCGACGACTTCGGCACCGGTTACTCGTCGCTCGCCTACCTCACGCGCATCCCCTTCGACACGCTCAAGATCGA
CAAGAGCTTCATCGAGCGCATCGGCGACGACCCGCGCGTGGGCTCACTGGTACGCTCGATCATCTCGCTGGGACGCGATG
CCGGCATGCATGTCGTCGCCGAGGGCGTGGAAACCGACGCCCAGGTCCAGCGCCTGCGCGACTTTCACTGCCACAGCATA
CAGGGCCATGTGTTCTCGGGCGCCCTGCCTCCGACGCATGCCGAAGCGTTGCTTCACAACGTCGCGAACGTCACCCCGCC
CGGCCAGTGA

Upstream 100 bases:

>100_bases
ACAGCATGGCATGCTTGCCATCCAGCGCCCATCTTTCGCGCTGGATGAGAAATTTCATACTCGTATGATGCCATATCAGA
CTTAATGCTCAGCCAAAGGC

Downstream 100 bases:

>100_bases
CGCCTGGCCTCACTGGCCCAGCGACTCATCTAGCTCACCGGGGTCGGTATGCCGAACATCGAGCCCCTTGACCAGATAGA
TGACGTGTTCGGCGAGATTG

Product: GAF sensor-containing diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MSHSAFRRNRANRASARRRLVLTFLAPGCLHGSAQALPPACLHDAGPGIATREHCMVNVPGVAAPDHPDETRRLDELHRL
GLMDTPPEKRFDDITRLAARVFGVPIVLITLVDRHRQWFKSRFGIDACETSRDNAFCAHALLERKLLVIEDTTRDARFRD
HPLVTETPYIRFYAGAVIRTAAGLPLGTLCLIDRHPRHFDASQREILLDLARLVENEIGDDAIMRLERARAEIGTQFDPQ
TRLATQQRFQQLIEARLNALSDDDTLCGVAAVDLYGMRAIRTRFSLQVSNNVLMRCIARVEKALDGFVFDLARIDDQRLG
VLLYRGDATRMAATMEALATTLRAPYIAAGKTVTAAARVVWAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPE
VLPRLTRRNLLRRRTASALAEDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDIVDIAEEIDLGDQLDIWVLR
RVMRQLSVWRDRGHDVLPVALNISQEQLARPAFADRFCALLAQYRLPGRLLKLEVLERSLIDDPEAIIESMQRLKRHGVG
FAIDDFGTGYSSLAYLTRIPFDTLKIDKSFIERIGDDPRVGSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSI
QGHVFSGALPPTHAEALLHNVANVTPPGQ

Sequences:

>Translated_669_residues
MSHSAFRRNRANRASARRRLVLTFLAPGCLHGSAQALPPACLHDAGPGIATREHCMVNVPGVAAPDHPDETRRLDELHRL
GLMDTPPEKRFDDITRLAARVFGVPIVLITLVDRHRQWFKSRFGIDACETSRDNAFCAHALLERKLLVIEDTTRDARFRD
HPLVTETPYIRFYAGAVIRTAAGLPLGTLCLIDRHPRHFDASQREILLDLARLVENEIGDDAIMRLERARAEIGTQFDPQ
TRLATQQRFQQLIEARLNALSDDDTLCGVAAVDLYGMRAIRTRFSLQVSNNVLMRCIARVEKALDGFVFDLARIDDQRLG
VLLYRGDATRMAATMEALATTLRAPYIAAGKTVTAAARVVWAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPE
VLPRLTRRNLLRRRTASALAEDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDIVDIAEEIDLGDQLDIWVLR
RVMRQLSVWRDRGHDVLPVALNISQEQLARPAFADRFCALLAQYRLPGRLLKLEVLERSLIDDPEAIIESMQRLKRHGVG
FAIDDFGTGYSSLAYLTRIPFDTLKIDKSFIERIGDDPRVGSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSI
QGHVFSGALPPTHAEALLHNVANVTPPGQ
>Mature_668_residues
SHSAFRRNRANRASARRRLVLTFLAPGCLHGSAQALPPACLHDAGPGIATREHCMVNVPGVAAPDHPDETRRLDELHRLG
LMDTPPEKRFDDITRLAARVFGVPIVLITLVDRHRQWFKSRFGIDACETSRDNAFCAHALLERKLLVIEDTTRDARFRDH
PLVTETPYIRFYAGAVIRTAAGLPLGTLCLIDRHPRHFDASQREILLDLARLVENEIGDDAIMRLERARAEIGTQFDPQT
RLATQQRFQQLIEARLNALSDDDTLCGVAAVDLYGMRAIRTRFSLQVSNNVLMRCIARVEKALDGFVFDLARIDDQRLGV
LLYRGDATRMAATMEALATTLRAPYIAAGKTVTAAARVVWAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPEV
LPRLTRRNLLRRRTASALAEDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDIVDIAEEIDLGDQLDIWVLRR
VMRQLSVWRDRGHDVLPVALNISQEQLARPAFADRFCALLAQYRLPGRLLKLEVLERSLIDDPEAIIESMQRLKRHGVGF
AIDDFGTGYSSLAYLTRIPFDTLKIDKSFIERIGDDPRVGSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSIQ
GHVFSGALPPTHAEALLHNVANVTPPGQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=26.5446224256293, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=29.3302540415704, Blast_Score=159, Evalue=8e-40,
Organism=Escherichia coli, GI226510982, Length=266, Percent_Identity=33.4586466165414, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=32.0675105485232, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=32.3886639676113, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=30.4166666666667, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=34.5528455284553, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=32.2314049586777, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787055, Length=227, Percent_Identity=30.8370044052863, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=31.6666666666667, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.0411522633745, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=26.5560165975104, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75308; Mature: 75177

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSAFRRNRANRASARRRLVLTFLAPGCLHGSAQALPPACLHDAGPGIATREHCMVNVP
CCCHHHHHHHHHHHHHHHHHHHEECCCHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEECC
GVAAPDHPDETRRLDELHRLGLMDTPPEKRFDDITRLAARVFGVPIVLITLVDRHRQWFK
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFGIDACETSRDNAFCAHALLERKLLVIEDTTRDARFRDHPLVTETPYIRFYAGAVIRT
HHCCCCHHCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AAGLPLGTLCLIDRHPRHFDASQREILLDLARLVENEIGDDAIMRLERARAEIGTQFDPQ
HCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
TRLATQQRFQQLIEARLNALSDDDTLCGVAAVDLYGMRAIRTRFSLQVSNNVLMRCIARV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
EKALDGFVFDLARIDDQRLGVLLYRGDATRMAATMEALATTLRAPYIAAGKTVTAAARVV
HHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEE
WAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPEVLPRLTRRNLLRRRTASALA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
EDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDIVDIAEEIDLGDQLDIWVLR
HCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
RVMRQLSVWRDRGHDVLPVALNISQEQLARPAFADRFCALLAQYRLPGRLLKLEVLERSL
HHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IDDPEAIIESMQRLKRHGVGFAIDDFGTGYSSLAYLTRIPFDTLKIDKSFIERIGDDPRV
CCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCHHHHHCHHHHHHCCCCCCH
GSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSIQGHVFSGALPPTHAEALLHN
HHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHH
VANVTPPGQ
HHCCCCCCC
>Mature Secondary Structure 
SHSAFRRNRANRASARRRLVLTFLAPGCLHGSAQALPPACLHDAGPGIATREHCMVNVP
CCHHHHHHHHHHHHHHHHHHHEECCCHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEECC
GVAAPDHPDETRRLDELHRLGLMDTPPEKRFDDITRLAARVFGVPIVLITLVDRHRQWFK
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRFGIDACETSRDNAFCAHALLERKLLVIEDTTRDARFRDHPLVTETPYIRFYAGAVIRT
HHCCCCHHCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AAGLPLGTLCLIDRHPRHFDASQREILLDLARLVENEIGDDAIMRLERARAEIGTQFDPQ
HCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
TRLATQQRFQQLIEARLNALSDDDTLCGVAAVDLYGMRAIRTRFSLQVSNNVLMRCIARV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
EKALDGFVFDLARIDDQRLGVLLYRGDATRMAATMEALATTLRAPYIAAGKTVTAAARVV
HHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEE
WAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPEVLPRLTRRNLLRRRTASALA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
EDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDIVDIAEEIDLGDQLDIWVLR
HCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
RVMRQLSVWRDRGHDVLPVALNISQEQLARPAFADRFCALLAQYRLPGRLLKLEVLERSL
HHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IDDPEAIIESMQRLKRHGVGFAIDDFGTGYSSLAYLTRIPFDTLKIDKSFIERIGDDPRV
CCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCHHHHHCHHHHHHCCCCCCH
GSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSIQGHVFSGALPPTHAEALLHN
HHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHH
VANVTPPGQ
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]