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The map label for this gene is bepF [H]

Identifier: 92115353

GI number: 92115353

Start: 3608033

End: 3609214

Strand: Direct

Name: bepF [H]

Synonym: Csal_3238

Alternate gene names: 92115353

Gene position: 3608033-3609214 (Clockwise)

Preceding gene: 92115351

Following gene: 92115354

Centisome position: 97.6

GC content: 67.17

Gene sequence:

>1182_bases
ATGAAGAGGTTCGTCCAGAAGCGCATGCCGAGATCAGGGCTGACTCACGGCCTGGGCGTCATGCTCGTCATCGCGCTGCT
GACCGGCTGCGACGCCCATGGCGAGGCGGAATCCGCCAGTACGCCGCCGCCCCCGGAAGTGGATGTGGCCACGGTGCTGG
TGGAGCCGGTCACGCTGCGCGAGACCTTCACCGGCCGCGTGGCGTCGCCGCAGACCGTGCAGGTTCGGCCACGGGTGAGC
GGCTATATCGACGAGGTCGCCTTCGAGGAAGGCGAACTGGTCGAGGCCGGCGATCTGCTGTTCCGCATCGACCCCCGCCC
CTACGAGGCTCGCGTCCAGGCCGCCAAGGCCTCGTTGGCACAGGCGCAGAGTCAGCGCCGTCTCACCGACGTCGAGGCGG
ATCGGTCCCGCCAGTTGATCCAGAAACACATGATTTCTCAGGAGCAGCACGATCAGCGCCAGGCAGCCGCGCTCAATGCC
CGGGCGCAGCAAGCGGAAGCCGAAGCCGCACTGACCAGTGCCGAGCTGGACCTGCAGTACACCCGGGTCACCGCACCGGT
GGCCGGCCGCACCGGTCGCGCCATGATCACCCAGGGCAACCTCGCCAGTGCCGATCAGTCGGTGCTGACCACGCTGGTGT
CGATGGATCCCTTGTACGTCTACTTCGACAGCAACGAAACCGAAGCCCAGGGGACGCAGACACTGATGGCCCGGGGCGAG
CCCCTGACGCTGAACATCGGCCTGACCGGCGAGACGGGCTTCCCCCATCAGGGACAGCTGGATTTCGTCGACAACCAGAT
CAACGCCGATACCGGCACGCTGCGCTATCGCGCCGTTCTGCCCAATCCGGATGGCCTCTTCAGGCCCGGCCAGTTCGCGC
GTGTGGAAATGCCCGTGGCTCACCTCGAGCAGGCCGTGCTGGTGAATCGCAAGGCCGTGCTCGCCAATCAGGATCGACGC
TTCGTCTACGTGGTCGGCAATGACGCCACCGTGACCCCCCGTCAGGTGGAGCTCGGCCGCGAGGTGGGAGAGCTGGTGGT
GATCCGCGACGGGCTGAAGGCCGGTGAGCGGGTGATCGTCAACGGTACCCAGAAGGTGTTCGCCCCCGGCATGCCGGTCA
CGCCGAACCCGGTGGCCATGCGCGAGCCGAACGCCGGCAACGACATCGCCACGCGGTCCTAG

Upstream 100 bases:

>100_bases
CGTCCATGATCCCATGCCGGCTCATCGTCGCCCGCCAGGGCGCTGCGCCGGATGCAAGGGCACGGGATCGACGACCGGGA
ACGACCAAGGGGGCCAGGCA

Downstream 100 bases:

>100_bases
CACTGCCTGCAGGCGCTTCTTTCTCCCCGGAATGACAAGACGCGGTGGGCGTCGTCCTCACCGCCCAGGAGCCAGTGGTC
ATGAATTTTTCCCGCTTTTT

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKRFVQKRMPRSGLTHGLGVMLVIALLTGCDAHGEAESASTPPPPEVDVATVLVEPVTLRETFTGRVASPQTVQVRPRVS
GYIDEVAFEEGELVEAGDLLFRIDPRPYEARVQAAKASLAQAQSQRRLTDVEADRSRQLIQKHMISQEQHDQRQAAALNA
RAQQAEAEAALTSAELDLQYTRVTAPVAGRTGRAMITQGNLASADQSVLTTLVSMDPLYVYFDSNETEAQGTQTLMARGE
PLTLNIGLTGETGFPHQGQLDFVDNQINADTGTLRYRAVLPNPDGLFRPGQFARVEMPVAHLEQAVLVNRKAVLANQDRR
FVYVVGNDATVTPRQVELGREVGELVVIRDGLKAGERVIVNGTQKVFAPGMPVTPNPVAMREPNAGNDIATRS

Sequences:

>Translated_393_residues
MKRFVQKRMPRSGLTHGLGVMLVIALLTGCDAHGEAESASTPPPPEVDVATVLVEPVTLRETFTGRVASPQTVQVRPRVS
GYIDEVAFEEGELVEAGDLLFRIDPRPYEARVQAAKASLAQAQSQRRLTDVEADRSRQLIQKHMISQEQHDQRQAAALNA
RAQQAEAEAALTSAELDLQYTRVTAPVAGRTGRAMITQGNLASADQSVLTTLVSMDPLYVYFDSNETEAQGTQTLMARGE
PLTLNIGLTGETGFPHQGQLDFVDNQINADTGTLRYRAVLPNPDGLFRPGQFARVEMPVAHLEQAVLVNRKAVLANQDRR
FVYVVGNDATVTPRQVELGREVGELVVIRDGLKAGERVIVNGTQKVFAPGMPVTPNPVAMREPNAGNDIATRS
>Mature_393_residues
MKRFVQKRMPRSGLTHGLGVMLVIALLTGCDAHGEAESASTPPPPEVDVATVLVEPVTLRETFTGRVASPQTVQVRPRVS
GYIDEVAFEEGELVEAGDLLFRIDPRPYEARVQAAKASLAQAQSQRRLTDVEADRSRQLIQKHMISQEQHDQRQAAALNA
RAQQAEAEAALTSAELDLQYTRVTAPVAGRTGRAMITQGNLASADQSVLTTLVSMDPLYVYFDSNETEAQGTQTLMARGE
PLTLNIGLTGETGFPHQGQLDFVDNQINADTGTLRYRAVLPNPDGLFRPGQFARVEMPVAHLEQAVLVNRKAVLANQDRR
FVYVVGNDATVTPRQVELGREVGELVVIRDGLKAGERVIVNGTQKVFAPGMPVTPNPVAMREPNAGNDIATRS

Specific function: May contribute to resistance to some drugs, such as deoxycholate, sodium dodecyl sulfate and nalidixic acid, in the absence of BepD and BepE [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1786668, Length=367, Percent_Identity=33.7874659400545, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1789665, Length=354, Percent_Identity=32.2033898305085, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1789929, Length=364, Percent_Identity=30.7692307692308, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI87082036, Length=328, Percent_Identity=30.1829268292683, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1790519, Length=259, Percent_Identity=30.8880308880309, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081951, Length=164, Percent_Identity=37.1951219512195, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081796, Length=337, Percent_Identity=25.5192878338279, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42734; Mature: 42734

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFVQKRMPRSGLTHGLGVMLVIALLTGCDAHGEAESASTPPPPEVDVATVLVEPVTLR
CCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEH
ETFTGRVASPQTVQVRPRVSGYIDEVAFEEGELVEAGDLLFRIDPRPYEARVQAAKASLA
HHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHH
QAQSQRRLTDVEADRSRQLIQKHMISQEQHDQRQAAALNARAQQAEAEAALTSAELDLQY
HHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
TRVTAPVAGRTGRAMITQGNLASADQSVLTTLVSMDPLYVYFDSNETEAQGTQTLMARGE
EEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCC
PLTLNIGLTGETGFPHQGQLDFVDNQINADTGTLRYRAVLPNPDGLFRPGQFARVEMPVA
EEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCHH
HLEQAVLVNRKAVLANQDRRFVYVVGNDATVTPRQVELGREVGELVVIRDGLKAGERVIV
HHHHHHHHCCHHEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEE
NGTQKVFAPGMPVTPNPVAMREPNAGNDIATRS
ECCHHEECCCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MKRFVQKRMPRSGLTHGLGVMLVIALLTGCDAHGEAESASTPPPPEVDVATVLVEPVTLR
CCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEH
ETFTGRVASPQTVQVRPRVSGYIDEVAFEEGELVEAGDLLFRIDPRPYEARVQAAKASLA
HHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHH
QAQSQRRLTDVEADRSRQLIQKHMISQEQHDQRQAAALNARAQQAEAEAALTSAELDLQY
HHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
TRVTAPVAGRTGRAMITQGNLASADQSVLTTLVSMDPLYVYFDSNETEAQGTQTLMARGE
EEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCC
PLTLNIGLTGETGFPHQGQLDFVDNQINADTGTLRYRAVLPNPDGLFRPGQFARVEMPVA
EEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCHH
HLEQAVLVNRKAVLANQDRRFVYVVGNDATVTPRQVELGREVGELVVIRDGLKAGERVIV
HHHHHHHHCCHHEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCCCEEEE
NGTQKVFAPGMPVTPNPVAMREPNAGNDIATRS
ECCHHEECCCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]