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The map label for this gene is ygdD [C]

Identifier: 92115264

GI number: 92115264

Start: 3505394

End: 3505777

Strand: Direct

Name: ygdD [C]

Synonym: Csal_3149

Alternate gene names: 92115264

Gene position: 3505394-3505777 (Clockwise)

Preceding gene: 92115258

Following gene: 92115270

Centisome position: 94.83

GC content: 68.49

Gene sequence:

>384_bases
ATGCACAAGCGTCGTGGATGGACACTCGTCGCTCTAAGCGGCTTGGTCGTGGTCATGGCAGGCGCCTTCGGCGCCCACGC
GCTGGGCGACATGCTTCCCCCCGCACGACTCGACGCCTTCACCACCGGCGTGCGCTATCAGGCGTGGCATACCCTGGCCG
CCATGGCGGTGCTCCTGTGGCACGCGCAGCACCCTCTGAGGGGCCAGACAACCGTGCTCTGGCTGTGGGGGCTGGGCATG
GCGGCGTTTTCCGGCTCGCTGTACCTGCTGGCCCTGACAGGCGCCCATTGGCTGGGGCCCATCACGCCGTTCGGTGGTCT
GTTGCTGATGGCCGGCTGGCTGACGCTGGCGATATGCGCCTGGCGTCAGCGCCCCGCTCACTGA

Upstream 100 bases:

>100_bases
AAGCGACGCCATAGGGTAAGCACCAGCGCGGCGATGCCGGGCCCCTCGCCCCCGGTGCTCGCTCACCGTCTCAGCATAGG
TCAGTCACATGGGATGCAAC

Downstream 100 bases:

>100_bases
GACCTCGCGCCCCACGTTCCAGACGCGCTCAATCGTCATCGCTCTCGTCGGGCAAGGCAGGATGTCTTGATGATGGATCA
AGCCCAGCGACCTGGAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MHKRRGWTLVALSGLVVVMAGAFGAHALGDMLPPARLDAFTTGVRYQAWHTLAAMAVLLWHAQHPLRGQTTVLWLWGLGM
AAFSGSLYLLALTGAHWLGPITPFGGLLLMAGWLTLAICAWRQRPAH

Sequences:

>Translated_127_residues
MHKRRGWTLVALSGLVVVMAGAFGAHALGDMLPPARLDAFTTGVRYQAWHTLAAMAVLLWHAQHPLRGQTTVLWLWGLGM
AAFSGSLYLLALTGAHWLGPITPFGGLLLMAGWLTLAICAWRQRPAH
>Mature_127_residues
MHKRRGWTLVALSGLVVVMAGAFGAHALGDMLPPARLDAFTTGVRYQAWHTLAAMAVLLWHAQHPLRGQTTVLWLWGLGM
AAFSGSLYLLALTGAHWLGPITPFGGLLLMAGWLTLAICAWRQRPAH

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=129, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13792; Mature: 13792

Theoretical pI: Translated: 11.79; Mature: 11.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKRRGWTLVALSGLVVVMAGAFGAHALGDMLPPARLDAFTTGVRYQAWHTLAAMAVLLW
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
HAQHPLRGQTTVLWLWGLGMAAFSGSLYLLALTGAHWLGPITPFGGLLLMAGWLTLAICA
HCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
WRQRPAH
HHCCCCC
>Mature Secondary Structure
MHKRRGWTLVALSGLVVVMAGAFGAHALGDMLPPARLDAFTTGVRYQAWHTLAAMAVLLW
CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
HAQHPLRGQTTVLWLWGLGMAAFSGSLYLLALTGAHWLGPITPFGGLLLMAGWLTLAICA
HCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
WRQRPAH
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]