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The map label for this gene is ybbN [H]

Identifier: 92115150

GI number: 92115150

Start: 3381870

End: 3382694

Strand: Direct

Name: ybbN [H]

Synonym: Csal_3035

Alternate gene names: 92115150

Gene position: 3381870-3382694 (Clockwise)

Preceding gene: 92115148

Following gene: 92115152

Centisome position: 91.48

GC content: 67.27

Gene sequence:

>825_bases
ATGTCCAACTTCCAGCAGGTCGTGCTGGAAGGCTCGATGCAAGGCCCGGTGCTGCTCGACAGCTGGGCGCCCTGGTGCGA
ACCGTGCAAGAACCTGATGCCGGTGCTCGAAAAGCTGGCCCGCGAGTATGGTGGCGCTTTCACCCTGGCCAAGCTGAACA
TCGAGGACAACCAGGAAATCGCCACGCAACTGGGCATCCGCTCGGTCCCCGACGTCAAGTTGATCGTGCAGGGCCAGCTC
TACGACCAGTTTCAGGGAGCGCTCCCCGAGTCGCAGATCCGCGAGTGGCTGTCGCAGTACCTCAAGGCCCCCGAGGCGGC
CGAGGCCACGCCCGAGGAAAGAGCGCAGCAGGCACTGGAGGCAGGGGACGCCGCCACCGCACGCGGCATCTACGAGACAC
TGGTTCGGGAGTGGCCCGACCACCACGACTACCAGGTCGATCTCGCCGGCGCACTGCTGGCGGAAGGCAAGCCCGATGAG
GCCCGTGCACTGCTCGACAACCTGCCGCCGGAGCATCGCGATGCCGCCAAGGCACGCGGTGTCCGTGCGCGACTCGATTT
CGGCGAGGAGGCGCCCAGCGCCGCGGAAGTCGCCGAGCTGGGCGAGCGCGACGACAGCGAAGCACGCTTCAAGCGGGCCC
TGCGGCAAGTCGCCGACGGCCAGTACGAAGCCGGCCTGGACGCCCTGCTGGCCCTGATGAAATCCGACCGCGCCTATGGC
GACGACGTGGCCCGCAAGACACTGCTGCGGGTCTTCGATGCCCTGGGGGCCGACCACCCCTTGACGGTGGCCTATCGGCG
CAAGATGTTCGCGCTGCTGTACTGA

Upstream 100 bases:

>100_bases
CGAACCCCTTACGTCGTCTCAAGACGGTGATACCGGCGCCGACGCCGGCCGACCCAATGCCGGCGCACAGGACGCCTCGC
AATTCATCGTCGATGTCGAC

Downstream 100 bases:

>100_bases
GCCCCGGGCGTACTTGCCCTGACAACCGCTTCACGACACGCGGGAGGCCCGATCGCAGGTCTCCCGCCTTTATCTGATGG
TGTGCCTCATCCGTCGGCAG

Product: thioredoxin-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSNFQQVVLEGSMQGPVLLDSWAPWCEPCKNLMPVLEKLAREYGGAFTLAKLNIEDNQEIATQLGIRSVPDVKLIVQGQL
YDQFQGALPESQIREWLSQYLKAPEAAEATPEERAQQALEAGDAATARGIYETLVREWPDHHDYQVDLAGALLAEGKPDE
ARALLDNLPPEHRDAAKARGVRARLDFGEEAPSAAEVAELGERDDSEARFKRALRQVADGQYEAGLDALLALMKSDRAYG
DDVARKTLLRVFDALGADHPLTVAYRRKMFALLY

Sequences:

>Translated_274_residues
MSNFQQVVLEGSMQGPVLLDSWAPWCEPCKNLMPVLEKLAREYGGAFTLAKLNIEDNQEIATQLGIRSVPDVKLIVQGQL
YDQFQGALPESQIREWLSQYLKAPEAAEATPEERAQQALEAGDAATARGIYETLVREWPDHHDYQVDLAGALLAEGKPDE
ARALLDNLPPEHRDAAKARGVRARLDFGEEAPSAAEVAELGERDDSEARFKRALRQVADGQYEAGLDALLALMKSDRAYG
DDVARKTLLRVFDALGADHPLTVAYRRKMFALLY
>Mature_273_residues
SNFQQVVLEGSMQGPVLLDSWAPWCEPCKNLMPVLEKLAREYGGAFTLAKLNIEDNQEIATQLGIRSVPDVKLIVQGQLY
DQFQGALPESQIREWLSQYLKAPEAAEATPEERAQQALEAGDAATARGIYETLVREWPDHHDYQVDLAGALLAEGKPDEA
RALLDNLPPEHRDAAKARGVRARLDFGEEAPSAAEVAELGERDDSEARFKRALRQVADGQYEAGLDALLALMKSDRAYGD
DVARKTLLRVFDALGADHPLTVAYRRKMFALLY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=99, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87081747, Length=281, Percent_Identity=33.0960854092527, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=39.5348837209302, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082331, Length=87, Percent_Identity=42.5287356321839, Blast_Score=81, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI212646193, Length=103, Percent_Identity=33.0097087378641, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28573567, Length=102, Percent_Identity=32.3529411764706, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 30391; Mature: 30259

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFQQVVLEGSMQGPVLLDSWAPWCEPCKNLMPVLEKLAREYGGAFTLAKLNIEDNQEI
CCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHH
ATQLGIRSVPDVKLIVQGQLYDQFQGALPESQIREWLSQYLKAPEAAEATPEERAQQALE
HHHHCCCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AGDAATARGIYETLVREWPDHHDYQVDLAGALLAEGKPDEARALLDNLPPEHRDAAKARG
HCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHCC
VRARLDFGEEAPSAAEVAELGERDDSEARFKRALRQVADGQYEAGLDALLALMKSDRAYG
CHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DDVARKTLLRVFDALGADHPLTVAYRRKMFALLY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNFQQVVLEGSMQGPVLLDSWAPWCEPCKNLMPVLEKLAREYGGAFTLAKLNIEDNQEI
CHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHH
ATQLGIRSVPDVKLIVQGQLYDQFQGALPESQIREWLSQYLKAPEAAEATPEERAQQALE
HHHHCCCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AGDAATARGIYETLVREWPDHHDYQVDLAGALLAEGKPDEARALLDNLPPEHRDAAKARG
HCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHCC
VRARLDFGEEAPSAAEVAELGERDDSEARFKRALRQVADGQYEAGLDALLALMKSDRAYG
CHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DDVARKTLLRVFDALGADHPLTVAYRRKMFALLY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]