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The map label for this gene is ypjD [H]

Identifier: 92115133

GI number: 92115133

Start: 3359140

End: 3359940

Strand: Direct

Name: ypjD [H]

Synonym: Csal_3018

Alternate gene names: 92115133

Gene position: 3359140-3359940 (Clockwise)

Preceding gene: 92115122

Following gene: 92115134

Centisome position: 90.87

GC content: 66.29

Gene sequence:

>801_bases
ATGCAGGCGCTGCCTTTTGCGATTCTCGCCATTGTCTGTTATCTCGCCGCAGGAAGCTGGCAAGCACTGGCGCTCGCCAG
GCGCGTGGCGCCCCGAGCGGCGCTCGTGCGCTCGCTGGGCCTGCTTGCGGTCAGCGCGCACGCCGTGGTCGTGGCCCACA
GCGTCTTTCTCGGTCACGGACTGCATCTGGGGCTGTTCGAGAGCGCATCGCTGTTCAGCTGGCTGATCGCGGCGCTGTTG
ATCGCCGTCAGCCTGCTCAAGCCGTTATTGAGCGTCGGAGCCGGTCTCTTTCCACTGGCGGCGCTGACCCTGATCGCGCT
GATGCTGTTCCCCAGCCACATGGTCGAGGCCAACGTCTCGCCCGGCATCGTCTTTCATATCCTGACGTCGAGCGTGGCCT
CGGCATTGCTCAGCATCGCCGCCGTGCAAGCCATGCTGGTCGCGCTGCAGAATCACGCACTCAAGCGCCGGCATACGCGC
GGCATCGTCCAGGTGCTGCCTGCCCTGACCAGCATGGAACGCCTGCTGTTCGAGCTGATCGGCGCCGGCCTGCTGCTGCT
CACCGCGGCGATCGTCAGCGGCTTCATCTTCATCGACAACCTGTTCGCGCAGCATCTCGTGCACAAGACGGTGTTCTCGC
TGGCCGCCTGGATGGTCTTCACCGGCCTGCTCATCGGGCGTCACTGGCTGGGCTGGCGCGGCGCGCGCGCCGTGCGCTGG
ACGCTGGGCGGCTGCCTGCTGCTGGTGCTCGGCTACTTCGGCACCAAGGTCGCGCTGCAGCTCGTCTTCCACGACGTGTG
A

Upstream 100 bases:

>100_bases
GGGGATTCGCTATAGTAACGCTCCCGAGCCCACGTGGCACGGCCACAATGGGGTACTTCAATTTATCTTCGACGCCGACC
GGCGCAGGGATTGGCCACCG

Downstream 100 bases:

>100_bases
TAGCCCAGAGGTCGCCTTGACACCCCCGGGGGGAATCCCTACAAACGACGTTGGCTTTCAAGCGAGGACCTCTCCACCTT
GAGCGATGACATACCCTTGG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MQALPFAILAIVCYLAAGSWQALALARRVAPRAALVRSLGLLAVSAHAVVVAHSVFLGHGLHLGLFESASLFSWLIAALL
IAVSLLKPLLSVGAGLFPLAALTLIALMLFPSHMVEANVSPGIVFHILTSSVASALLSIAAVQAMLVALQNHALKRRHTR
GIVQVLPALTSMERLLFELIGAGLLLLTAAIVSGFIFIDNLFAQHLVHKTVFSLAAWMVFTGLLIGRHWLGWRGARAVRW
TLGGCLLLVLGYFGTKVALQLVFHDV

Sequences:

>Translated_266_residues
MQALPFAILAIVCYLAAGSWQALALARRVAPRAALVRSLGLLAVSAHAVVVAHSVFLGHGLHLGLFESASLFSWLIAALL
IAVSLLKPLLSVGAGLFPLAALTLIALMLFPSHMVEANVSPGIVFHILTSSVASALLSIAAVQAMLVALQNHALKRRHTR
GIVQVLPALTSMERLLFELIGAGLLLLTAAIVSGFIFIDNLFAQHLVHKTVFSLAAWMVFTGLLIGRHWLGWRGARAVRW
TLGGCLLLVLGYFGTKVALQLVFHDV
>Mature_266_residues
MQALPFAILAIVCYLAAGSWQALALARRVAPRAALVRSLGLLAVSAHAVVVAHSVFLGHGLHLGLFESASLFSWLIAALL
IAVSLLKPLLSVGAGLFPLAALTLIALMLFPSHMVEANVSPGIVFHILTSSVASALLSIAAVQAMLVALQNHALKRRHTR
GIVQVLPALTSMERLLFELIGAGLLLLTAAIVSGFIFIDNLFAQHLVHKTVFSLAAWMVFTGLLIGRHWLGWRGARAVRW
TLGGCLLLVLGYFGTKVALQLVFHDV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=272, Percent_Identity=30.8823529411765, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28379; Mature: 28379

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]