Click here to switch to the map view.

The map label for this gene is zntR [H]

Identifier: 92115120

GI number: 92115120

Start: 3345121

End: 3345555

Strand: Direct

Name: zntR [H]

Synonym: Csal_3005

Alternate gene names: 92115120

Gene position: 3345121-3345555 (Clockwise)

Preceding gene: 92115118

Following gene: 92115121

Centisome position: 90.49

GC content: 66.44

Gene sequence:

>435_bases
ATGAAAGTCAGCGACCTGGCTCGCGCCGCCGGTGTGACCGGCGAAACGGTTCGCCACTACACCCGTGAAGGATTGCTCCA
TCCGCGTCGCGACCCCGGCAACGGTTATCAGCTCTACGATCCCGACGATCTCAATCGGCTGCGTTTCATCCAGCGGGCCC
GCACGCTGGGCTTCAGCCTGCGCGAGGTGCGCGAAATTCTCGAGCATGCCGACCACGGCGATTCACCGTGCCCCATGGTC
CGCGACCTGCTCGCCGCGCGCCTGCCGGACATTCATGCGCGCATCCGCGAGTTGCAGGCCCTGGCGACACGCATGGAACG
TGCCCTGGAGACCTGGCGCGACATGCCCGACGGCACGCCCGATGGACACAGCCTGTGCCGGTTGATCGAAAGCCTGCCGA
TGGAAGACGACGGCACGCCCGCCCACACCCCTTGA

Upstream 100 bases:

>100_bases
TTCATAAAGTTGCCACTCCATCGTCGACGCTTGCAGACATTTCCTTGACCTTTGTGTTACCCACAGGTTTTAGACTTTTC
CCATCGCACAGGAGACCGCC

Downstream 100 bases:

>100_bases
ACGCGGGCCACGCACAACGGAGGAACGCGCCCATGGCATCGCACGACGAACACCGCTTCCACGTCCCCGGCATGAACTGC
CAGGGCTGCGTCAAGCGCAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Zn(II)-responsive regulator of zntA [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKVSDLARAAGVTGETVRHYTREGLLHPRRDPGNGYQLYDPDDLNRLRFIQRARTLGFSLREVREILEHADHGDSPCPMV
RDLLAARLPDIHARIRELQALATRMERALETWRDMPDGTPDGHSLCRLIESLPMEDDGTPAHTP

Sequences:

>Translated_144_residues
MKVSDLARAAGVTGETVRHYTREGLLHPRRDPGNGYQLYDPDDLNRLRFIQRARTLGFSLREVREILEHADHGDSPCPMV
RDLLAARLPDIHARIRELQALATRMERALETWRDMPDGTPDGHSLCRLIESLPMEDDGTPAHTP
>Mature_144_residues
MKVSDLARAAGVTGETVRHYTREGLLHPRRDPGNGYQLYDPDDLNRLRFIQRARTLGFSLREVREILEHADHGDSPCPMV
RDLLAARLPDIHARIRELQALATRMERALETWRDMPDGTPDGHSLCRLIESLPMEDDGTPAHTP

Specific function: Zinc-responsive transcriptional regulator of zntA [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=142, Percent_Identity=35.2112676056338, Blast_Score=87, Evalue=5e-19,
Organism=Escherichia coli, GI1786695, Length=101, Percent_Identity=30.6930693069307, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358
- InterPro:   IPR011788 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 16357; Mature: 16357

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSDLARAAGVTGETVRHYTREGLLHPRRDPGNGYQLYDPDDLNRLRFIQRARTLGFSL
CCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
REVREILEHADHGDSPCPMVRDLLAARLPDIHARIRELQALATRMERALETWRDMPDGTP
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGHSLCRLIESLPMEDDGTPAHTP
CHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKVSDLARAAGVTGETVRHYTREGLLHPRRDPGNGYQLYDPDDLNRLRFIQRARTLGFSL
CCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
REVREILEHADHGDSPCPMVRDLLAARLPDIHARIRELQALATRMERALETWRDMPDGTP
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGHSLCRLIESLPMEDDGTPAHTP
CHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]