Click here to switch to the map view.

The map label for this gene is yfkM [H]

Identifier: 92115071

GI number: 92115071

Start: 3290577

End: 3291191

Strand: Direct

Name: yfkM [H]

Synonym: Csal_2955

Alternate gene names: 92115071

Gene position: 3290577-3291191 (Clockwise)

Preceding gene: 92115069

Following gene: 92115072

Centisome position: 89.02

GC content: 63.25

Gene sequence:

>615_bases
ATGTCCGGGGGCGGTCGCCCACTCATGGAGCAACACGACCAGGAGGTCACGATGAGTCAAGCACAGTCAGGTAAACGCGT
CGCCATTCTCGCCACTCACGGTTTCGAAGAGTCCGAACTCTCCGCACCGCGTGCCGCCCTGCGCAGTCAAGGTGTCGAAG
TACATGTGGTATCGCCGGACGGCAAGGGCATTCGTGCCTGGGCGGAGACCGACTGGGGCGATACCTACGAGGCCGACAAG
GCATTGAGCGATGTCGACTCGACCGACTATCACGCCTTGGTATTGCCCGGCGGGCTGTTCAACCCCGATGAGCTGCGCCT
CAACGACCAGGCTCTCGATTTCGTCCGCGGCTTCTTCGAAGCCGGCAAGCCGGTAGCGGCGATCTGCCACGCGCCGTGGA
TCCTGATCAACGCCGGTGTCGTCGAAGGTCGCCGCATGACCTCGGTCGCCTCCGTCGCCGAGGATCTCAAGAATGCCGGG
GCCGAATGGGTCGACGAGAAGGTCGTGGTCGACAACGGGCTCGTCACCAGCCGGACGCCCAAGGACCTGGACGCCTTCAA
CGACAAACTGATCGAGGAGTTGGCCGAAGGTCGCCACAGCGGACAACACGCCTGA

Upstream 100 bases:

>100_bases
ACCTTCCCCCACTCGGCGCGACGACGCAAGCAATCGGGGGTTGAAGTCCCGCCTCGATGACCCAAACTGGTGGAATGAGG
CCGTCGATGCCGGACCGGGA

Downstream 100 bases:

>100_bases
TGGCAGCCCATCGACGCCAATCGACGCCCGCCTCGCAAGAGGCGGGCGCTTTGCGTGCGGCCTCCGCCGCGAGTGACGTC
GGCTCCCGGGGTGGCATGGC

Product: peptidase C56, PfpI

Products: NA

Alternate protein names: GSP18 [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSGGGRPLMEQHDQEVTMSQAQSGKRVAILATHGFEESELSAPRAALRSQGVEVHVVSPDGKGIRAWAETDWGDTYEADK
ALSDVDSTDYHALVLPGGLFNPDELRLNDQALDFVRGFFEAGKPVAAICHAPWILINAGVVEGRRMTSVASVAEDLKNAG
AEWVDEKVVVDNGLVTSRTPKDLDAFNDKLIEELAEGRHSGQHA

Sequences:

>Translated_204_residues
MSGGGRPLMEQHDQEVTMSQAQSGKRVAILATHGFEESELSAPRAALRSQGVEVHVVSPDGKGIRAWAETDWGDTYEADK
ALSDVDSTDYHALVLPGGLFNPDELRLNDQALDFVRGFFEAGKPVAAICHAPWILINAGVVEGRRMTSVASVAEDLKNAG
AEWVDEKVVVDNGLVTSRTPKDLDAFNDKLIEELAEGRHSGQHA
>Mature_203_residues
SGGGRPLMEQHDQEVTMSQAQSGKRVAILATHGFEESELSAPRAALRSQGVEVHVVSPDGKGIRAWAETDWGDTYEADKA
LSDVDSTDYHALVLPGGLFNPDELRLNDQALDFVRGFFEAGKPVAAICHAPWILINAGVVEGRRMTSVASVAEDLKNAGA
EWVDEKVVVDNGLVTSRTPKDLDAFNDKLIEELAEGRHSGQHA

Specific function: Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins [H]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

Organism=Escherichia coli, GI87082219, Length=168, Percent_Identity=44.047619047619, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17531319, Length=170, Percent_Identity=30.5882352941176, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28571932, Length=193, Percent_Identity=31.0880829015544, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006286
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 22031; Mature: 21899

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGGRPLMEQHDQEVTMSQAQSGKRVAILATHGFEESELSAPRAALRSQGVEVHVVSPD
CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCHHHHHHHCCCEEEEECCC
GKGIRAWAETDWGDTYEADKALSDVDSTDYHALVLPGGLFNPDELRLNDQALDFVRGFFE
CCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHEEECHHHHHHHHHHHH
AGKPVAAICHAPWILINAGVVEGRRMTSVASVAEDLKNAGAEWVDEKVVVDNGLVTSRTP
CCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEECCCEECCCCC
KDLDAFNDKLIEELAEGRHSGQHA
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SGGGRPLMEQHDQEVTMSQAQSGKRVAILATHGFEESELSAPRAALRSQGVEVHVVSPD
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCHHHHHHHCCCEEEEECCC
GKGIRAWAETDWGDTYEADKALSDVDSTDYHALVLPGGLFNPDELRLNDQALDFVRGFFE
CCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHEEECHHHHHHHHHHHH
AGKPVAAICHAPWILINAGVVEGRRMTSVASVAEDLKNAGAEWVDEKVVVDNGLVTSRTP
CCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCEEEECCCEECCCCC
KDLDAFNDKLIEELAEGRHSGQHA
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377; 9298659 [H]