| Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
|---|---|
| Accession | NC_007963 |
| Length | 3,696,649 |
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The map label for this gene is dsbD [H]
Identifier: 92114710
GI number: 92114710
Start: 2903724
End: 2905688
Strand: Direct
Name: dsbD [H]
Synonym: Csal_2592
Alternate gene names: 92114710
Gene position: 2903724-2905688 (Clockwise)
Preceding gene: 92114708
Following gene: 92114711
Centisome position: 78.55
GC content: 69.31
Gene sequence:
>1965_bases ATGATGTCACTGGCATGGAACCTCATGAGTCACGAATTACGCTGGTCACCCCGTCCCGTTCACGCCCTGCATCGATGGTT CGCCATCGTGCTGGGCGCCGTCATGCTGATCCTGGCGTATCCCGCAGCGGCCGATTCGCCGTTTGCCTCGCAGGACGAGT TCCTGTCCGCCGAGCAGGCGTTCTCGTTATCGCTCTCCCGGGAAGACGGCGAGCTCGTCGCGCAATGGGAGATCGCCCCC GATTACTATCTCTACCGCAAGCGCTTCAGCGTCGAGACCGAGGAGGGAGCGGTAACCCCGGACCTGCCCGAGGGCGAGAC GATCGAGGACGAGTACTTCGGTCGCTCCGAGGTCTATCACTACGCCGTCACGTTGCGCGCCGCGCTGGGCGATGCCGAAA GAGTGACCCTGGCCTGGCAAGGCTGCGCCGAAGCCGGTCTCTGCTATCCGCCGCAACGTCAGACGTTCGACGCCGAGTCG CTCGAGCCGCTGGGCCCGGCCAGCGTCGCCGGCGATGCCACCGTCGCCGACTCACCCGGCGACGCGAGCGCACCCGACAC CAACGGGGCACGCGCCACGAGCGCCCCTGACAGTCCCCAGGAGGAGCGCCAGATGGCGGCTTCGGCCCAGGGCGAGGATC AGCGCCTCGCGGCGCGGCTGGCCGATGCGCGACTCGGCTGGGTGGTCGCGGCCTTCTTTGGCATGGGGCTGCTGCTGACC TTCACCCCCTGCGTGCTGCCCATGGTGCCGATCCTCTCCAGCCTCATCGTCGGTGCCACCCGCGACGGCCGACCACGCAT GCGCGACGGTGCCATGCTCTCGCTCGCCTACATCCTGCCCATGGCAACGACCTATGCGGGACTTGGCGTCGCGGCGGCAC TCGCCGGCGCCAACCTGCAAATGCTCTTCCAGGCTCCTGCCTTCATCGTCAGTTTCGCCGCACTCTTCGTCCTGCTGGCC CTGGCGATGTTCGGTGCCTTCGAGCTGGCGTTGCCCAGCGGTCTGCAGACACGACTCGACGCCTGGATGGCGCGTCAACG CGGTGGGCGGCTGGGTGGCGCGGCCGTGATGGGCGTGCTCTCGGCCCTGCTGGTCGGCCCCTGCATGACCGCACCGCTGG CCGGCGCCCTGCTCTACATCGCCGACAGCGGCGACGCCTGGCAGGGCGCGCTGGCCCTGTGGTCACTGGGGCTGGGCATG GGCGCGCCCTTGCTCGCGGTGGGCCTGCTCGGACCTCGCATCCTGCCTCGCCCCGGCCCGTGGATGAACCACGTGCGCAT CGTGTTCGGCTTCGTCCTGCTGGGCATGGCGATATGGTTCGCGGCACGCGTGCTGCCCCCCGCCCTCGAACTGGCGGCGT GGGGCGCCCTGCTCGTCGGGCTGGCGCAGGCCGCCTGGCATGCCGCACGCACGCTGCGCGATGCCCTCGCCCCCCTGAGT CGCAGCATCGCCATGCTGCTGGCCCTGTGGGGCGTACTGATGATCGTCGGCGCGGCCAGTGGACAGCACGATCCATTGCG TCCCCTGGCGGGCTTCACCGGGAACGGCGACGCTGCCGGATCCGCCGAGGCCACGCCGCTGACCTTCGAGACCGTCGCCG ACCAGGCCGCGCTCGATGCCCGCCTGGACCGGGCAAGTGCGCAACAGCGCTGGACGCTGGTGGAGTTCACCGCCGACTGG TGCATCAGCTGCGAGATCATCGAGGACAACGTCTTCGGTGACGCGCGCGTGCAAGCGGCACTGGACGACGTGCAACGCCT GCGCATCGACGTCACCGACAACGATGCCGAGGACAGCGCCATCATGCAGGCGCTGGGCGTCGTCGGCCCGCCCACCCTGT TGTTCTACGGCCCCGATGGCACCGAGCGCCGAGAGAGCCGCATCATCGGCGAGTTGAGCGCCGAGGAATTCCTCGAGCGC CTGGACGCCGCACGCACGGCGACCGCGTCGGAGAAAGGAGCATGA
Upstream 100 bases:
>100_bases TCTTCTACTTCATCGCGTCCGCGCGCACTTGGCAAGCCTCGCGCGCCGTCAGACGGAAACGTTTAATGCTCGGCTAATCC CATCCCGTTACCCTAGCGCC
Downstream 100 bases:
>100_bases CGGCCCTGGATCGAAGCCTGGCCATCGGGCCCCTGGCGTTCAGCCTCGGTCAGCTGCTGCTGGCTCTGGCGCTTGGCGTG GCCATCGCCGCCGGCGCCCT
Product: cytochrome c biogenesis protein, transmembrane region
Products: NA
Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MMSLAWNLMSHELRWSPRPVHALHRWFAIVLGAVMLILAYPAAADSPFASQDEFLSAEQAFSLSLSREDGELVAQWEIAP DYYLYRKRFSVETEEGAVTPDLPEGETIEDEYFGRSEVYHYAVTLRAALGDAERVTLAWQGCAEAGLCYPPQRQTFDAES LEPLGPASVAGDATVADSPGDASAPDTNGARATSAPDSPQEERQMAASAQGEDQRLAARLADARLGWVVAAFFGMGLLLT FTPCVLPMVPILSSLIVGATRDGRPRMRDGAMLSLAYILPMATTYAGLGVAAALAGANLQMLFQAPAFIVSFAALFVLLA LAMFGAFELALPSGLQTRLDAWMARQRGGRLGGAAVMGVLSALLVGPCMTAPLAGALLYIADSGDAWQGALALWSLGLGM GAPLLAVGLLGPRILPRPGPWMNHVRIVFGFVLLGMAIWFAARVLPPALELAAWGALLVGLAQAAWHAARTLRDALAPLS RSIAMLLALWGVLMIVGAASGQHDPLRPLAGFTGNGDAAGSAEATPLTFETVADQAALDARLDRASAQQRWTLVEFTADW CISCEIIEDNVFGDARVQAALDDVQRLRIDVTDNDAEDSAIMQALGVVGPPTLLFYGPDGTERRESRIIGELSAEEFLER LDAARTATASEKGA
Sequences:
>Translated_654_residues MMSLAWNLMSHELRWSPRPVHALHRWFAIVLGAVMLILAYPAAADSPFASQDEFLSAEQAFSLSLSREDGELVAQWEIAP DYYLYRKRFSVETEEGAVTPDLPEGETIEDEYFGRSEVYHYAVTLRAALGDAERVTLAWQGCAEAGLCYPPQRQTFDAES LEPLGPASVAGDATVADSPGDASAPDTNGARATSAPDSPQEERQMAASAQGEDQRLAARLADARLGWVVAAFFGMGLLLT FTPCVLPMVPILSSLIVGATRDGRPRMRDGAMLSLAYILPMATTYAGLGVAAALAGANLQMLFQAPAFIVSFAALFVLLA LAMFGAFELALPSGLQTRLDAWMARQRGGRLGGAAVMGVLSALLVGPCMTAPLAGALLYIADSGDAWQGALALWSLGLGM GAPLLAVGLLGPRILPRPGPWMNHVRIVFGFVLLGMAIWFAARVLPPALELAAWGALLVGLAQAAWHAARTLRDALAPLS RSIAMLLALWGVLMIVGAASGQHDPLRPLAGFTGNGDAAGSAEATPLTFETVADQAALDARLDRASAQQRWTLVEFTADW CISCEIIEDNVFGDARVQAALDDVQRLRIDVTDNDAEDSAIMQALGVVGPPTLLFYGPDGTERRESRIIGELSAEEFLER LDAARTATASEKGA >Mature_654_residues MMSLAWNLMSHELRWSPRPVHALHRWFAIVLGAVMLILAYPAAADSPFASQDEFLSAEQAFSLSLSREDGELVAQWEIAP DYYLYRKRFSVETEEGAVTPDLPEGETIEDEYFGRSEVYHYAVTLRAALGDAERVTLAWQGCAEAGLCYPPQRQTFDAES LEPLGPASVAGDATVADSPGDASAPDTNGARATSAPDSPQEERQMAASAQGEDQRLAARLADARLGWVVAAFFGMGLLLT FTPCVLPMVPILSSLIVGATRDGRPRMRDGAMLSLAYILPMATTYAGLGVAAALAGANLQMLFQAPAFIVSFAALFVLLA LAMFGAFELALPSGLQTRLDAWMARQRGGRLGGAAVMGVLSALLVGPCMTAPLAGALLYIADSGDAWQGALALWSLGLGM GAPLLAVGLLGPRILPRPGPWMNHVRIVFGFVLLGMAIWFAARVLPPALELAAWGALLVGLAQAAWHAARTLRDALAPLS RSIAMLLALWGVLMIVGAASGQHDPLRPLAGFTGNGDAAGSAEATPLTFETVADQAALDARLDRASAQQRWTLVEFTADW CISCEIIEDNVFGDARVQAALDDVQRLRIDVTDNDAEDSAIMQALGVVGPPTLLFYGPDGTERRESRIIGELSAEEFLER LDAARTATASEKGA
Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a
COG id: COG4232
COG function: function code OC; Thiol:disulfide interchange protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1790578, Length=603, Percent_Identity=34.1625207296849, Blast_Score=325, Evalue=5e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003834 - InterPro: IPR022910 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]
EC number: =1.8.1.8 [H]
Molecular weight: Translated: 69550; Mature: 69550
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSLAWNLMSHELRWSPRPVHALHRWFAIVLGAVMLILAYPAAADSPFASQDEFLSAEQA CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH FSLSLSREDGELVAQWEIAPDYYLYRKRFSVETEEGAVTPDLPEGETIEDEYFGRSEVYH HEEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHH YAVTLRAALGDAERVTLAWQGCAEAGLCYPPQRQTFDAESLEPLGPASVAGDATVADSPG HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DASAPDTNGARATSAPDSPQEERQMAASAQGEDQRLAARLADARLGWVVAAFFGMGLLLT CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTPCVLPMVPILSSLIVGATRDGRPRMRDGAMLSLAYILPMATTYAGLGVAAALAGANLQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH MLFQAPAFIVSFAALFVLLALAMFGAFELALPSGLQTRLDAWMARQRGGRLGGAAVMGVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH SALLVGPCMTAPLAGALLYIADSGDAWQGALALWSLGLGMGAPLLAVGLLGPRILPRPGP HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC WMNHVRIVFGFVLLGMAIWFAARVLPPALELAAWGALLVGLAQAAWHAARTLRDALAPLS HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSIAMLLALWGVLMIVGAASGQHDPLRPLAGFTGNGDAAGSAEATPLTFETVADQAALDA HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH RLDRASAQQRWTLVEFTADWCISCEIIEDNVFGDARVQAALDDVQRLRIDVTDNDAEDSA HHHHHHHHHCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHH IMQALGVVGPPTLLFYGPDGTERRESRIIGELSAEEFLERLDAARTATASEKGA HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MMSLAWNLMSHELRWSPRPVHALHRWFAIVLGAVMLILAYPAAADSPFASQDEFLSAEQA CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH FSLSLSREDGELVAQWEIAPDYYLYRKRFSVETEEGAVTPDLPEGETIEDEYFGRSEVYH HEEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHH YAVTLRAALGDAERVTLAWQGCAEAGLCYPPQRQTFDAESLEPLGPASVAGDATVADSPG HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DASAPDTNGARATSAPDSPQEERQMAASAQGEDQRLAARLADARLGWVVAAFFGMGLLLT CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTPCVLPMVPILSSLIVGATRDGRPRMRDGAMLSLAYILPMATTYAGLGVAAALAGANLQ HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH MLFQAPAFIVSFAALFVLLALAMFGAFELALPSGLQTRLDAWMARQRGGRLGGAAVMGVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH SALLVGPCMTAPLAGALLYIADSGDAWQGALALWSLGLGMGAPLLAVGLLGPRILPRPGP HHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC WMNHVRIVFGFVLLGMAIWFAARVLPPALELAAWGALLVGLAQAAWHAARTLRDALAPLS HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSIAMLLALWGVLMIVGAASGQHDPLRPLAGFTGNGDAAGSAEATPLTFETVADQAALDA HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHH RLDRASAQQRWTLVEFTADWCISCEIIEDNVFGDARVQAALDDVQRLRIDVTDNDAEDSA HHHHHHHHHCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHH IMQALGVVGPPTLLFYGPDGTERRESRIIGELSAEEFLERLDAARTATASEKGA HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA