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The map label for this gene is ytfH [H]

Identifier: 92114681

GI number: 92114681

Start: 2876215

End: 2876628

Strand: Direct

Name: ytfH [H]

Synonym: Csal_2563

Alternate gene names: 92114681

Gene position: 2876215-2876628 (Clockwise)

Preceding gene: 92114679

Following gene: 92114684

Centisome position: 77.81

GC content: 58.45

Gene sequence:

>414_bases
GTGATACCGCAAGGCGAAGACGACCTGCTCGCTCGCTCCCGAGCACTCTGCGATGCGATGGAAGACGAGGACGACTGGCT
CAAAAGAGAAGTGCTATCCCACGCTGGCAATCGCTGGGCTTTTGGGGTGATTCACTCGCTCAAGGAAGGGGGCAAACTCA
GGCACGCCGAGATCCGACGCAGGCTCGGCGGGGTTACACAGCGGATGCTGACAAGAACGCTACGACAGCTCGAGCGTGAT
GGGCTGATCCATCGCCAGGATCATCAGGAAGTCCCGCCGCATGTCGAATACGAGCTGACCCGGCTGGGGGAGGAATTTCT
CCTAAAGATCATCCCGATGTGGCTTTGGATCTTCGAACACGCGGAAGATTTCCGTCAGGCCAGGAAAGAGCATTCGACGG
CAGCGAGTGAGTAG

Upstream 100 bases:

>100_bases
CTTCCTGTCTGTGTGATTCATGCTATCTCCAACATTGACGGCTCAGCTCGAGATAGCGGATGTTTGCACATCAGGATTCC
CCACATAAGTAGGTACATCA

Downstream 100 bases:

>100_bases
CGAAACGATTCATTGCCCAGCCCATCCAACGAGTCGCACCCTGTGGCCACCTCATCCCTCCTCCCAGCCTGTTGCCTTTC
TGCGCGCTGTCGACACCCCG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MIPQGEDDLLARSRALCDAMEDEDDWLKREVLSHAGNRWAFGVIHSLKEGGKLRHAEIRRRLGGVTQRMLTRTLRQLERD
GLIHRQDHQEVPPHVEYELTRLGEEFLLKIIPMWLWIFEHAEDFRQARKEHSTAASE

Sequences:

>Translated_137_residues
MIPQGEDDLLARSRALCDAMEDEDDWLKREVLSHAGNRWAFGVIHSLKEGGKLRHAEIRRRLGGVTQRMLTRTLRQLERD
GLIHRQDHQEVPPHVEYELTRLGEEFLLKIIPMWLWIFEHAEDFRQARKEHSTAASE
>Mature_137_residues
MIPQGEDDLLARSRALCDAMEDEDDWLKREVLSHAGNRWAFGVIHSLKEGGKLRHAEIRRRLGGVTQRMLTRTLRQLERD
GLIHRQDHQEVPPHVEYELTRLGEEFLLKIIPMWLWIFEHAEDFRQARKEHSTAASE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=43.3333333333333, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16130; Mature: 16130

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPQGEDDLLARSRALCDAMEDEDDWLKREVLSHAGNRWAFGVIHSLKEGGKLRHAEIRR
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
RLGGVTQRMLTRTLRQLERDGLIHRQDHQEVPPHVEYELTRLGEEFLLKIIPMWLWIFEH
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEDFRQARKEHSTAASE
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIPQGEDDLLARSRALCDAMEDEDDWLKREVLSHAGNRWAFGVIHSLKEGGKLRHAEIRR
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
RLGGVTQRMLTRTLRQLERDGLIHRQDHQEVPPHVEYELTRLGEEFLLKIIPMWLWIFEH
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEDFRQARKEHSTAASE
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]