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The map label for this gene is rhmA [H]

Identifier: 92114635

GI number: 92114635

Start: 2823141

End: 2823905

Strand: Direct

Name: rhmA [H]

Synonym: Csal_2517

Alternate gene names: 92114635

Gene position: 2823141-2823905 (Clockwise)

Preceding gene: 92114634

Following gene: 92114637

Centisome position: 76.37

GC content: 67.19

Gene sequence:

>765_bases
ATGCAACTGCCCCGCAACCCCTTCAAGGCCGCGCTCGACGGCGATACCCGCTACGGCTGCTGGGCCGGCTTCGCCACCGG
CTACGCCGCGGAGATTCTGGCCACCACCGGCTTCGACTGGCTGTTGATCGATGGCGAGCATGCACCCAACATCGTACCGA
CCACCCTGGCGCAACTGCAGGCGCTTGCCGCCTATCCTTGCGCACCGGTCGTGCGCACCGTGAATCACGACCCGGCGTTG
ATAAAGCAGCTGCTCGACATCGGCACCCAGACGCTGATGATTCCCATGGTCGATACCGCCGAGCAGGCCGCGCAGCTGGT
CGCCGCCACGCGCTACCCGCCGCATGGCTTTCGTGGCGTGGGCGGCGGGCTGACCCGCGCCACGCGCTGGGGCGCCGTCG
AGGACTACATGGCCCAGGCGCATGAGGAGTTATGCCTGATCGTGCAGGTGGAGTCGCGCAGCGGGGTCGACAACGCCGAG
GCCATCGCCGCCACGCCAGGGGTCGACGCCATCTTCGTGGGCCCGTTCGATCTCTCGACGGAGACCGGGCACATCGGCGA
CCCCACTCACCCCGAGGTCCAGGCGATGATTCGGCATACCCTGGACGCGACCCATGCCGCCGGCAAGGCGGCCGGCATTC
TGGCGCCAGCCGAAGCGGACGCCCGACGCTATGCGCAATGGGGATTCGACTTCATTGCCGTGGGTATCGATATCAGCCTG
TTGCGACAGGCTGCCATGGAGACCGTGTCACGCTACAAGGGCTAG

Upstream 100 bases:

>100_bases
CCGTGAGGAGGGCCATTAGACACTGGTGCAATGGTCGGGTGACAGGAAGCCTGTTACGTTCTTTGTATGCAATAGTCATC
TATCGACCAGGACACATGCC

Downstream 100 bases:

>100_bases
GCAGGACGGCGCGCAGAAAAATGCCGTGGCGCGAGGCCACGGCATCGTTTCGCGCTGCATTTTCGACGTTCAGGCGTAGG
TGTTGATCTGCGTGCCTACG

Product: 2-dehydro-3-deoxyglucarate aldolase

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MQLPRNPFKAALDGDTRYGCWAGFATGYAAEILATTGFDWLLIDGEHAPNIVPTTLAQLQALAAYPCAPVVRTVNHDPAL
IKQLLDIGTQTLMIPMVDTAEQAAQLVAATRYPPHGFRGVGGGLTRATRWGAVEDYMAQAHEELCLIVQVESRSGVDNAE
AIAATPGVDAIFVGPFDLSTETGHIGDPTHPEVQAMIRHTLDATHAAGKAAGILAPAEADARRYAQWGFDFIAVGIDISL
LRQAAMETVSRYKG

Sequences:

>Translated_254_residues
MQLPRNPFKAALDGDTRYGCWAGFATGYAAEILATTGFDWLLIDGEHAPNIVPTTLAQLQALAAYPCAPVVRTVNHDPAL
IKQLLDIGTQTLMIPMVDTAEQAAQLVAATRYPPHGFRGVGGGLTRATRWGAVEDYMAQAHEELCLIVQVESRSGVDNAE
AIAATPGVDAIFVGPFDLSTETGHIGDPTHPEVQAMIRHTLDATHAAGKAAGILAPAEADARRYAQWGFDFIAVGIDISL
LRQAAMETVSRYKG
>Mature_254_residues
MQLPRNPFKAALDGDTRYGCWAGFATGYAAEILATTGFDWLLIDGEHAPNIVPTTLAQLQALAAYPCAPVVRTVNHDPAL
IKQLLDIGTQTLMIPMVDTAEQAAQLVAATRYPPHGFRGVGGGLTRATRWGAVEDYMAQAHEELCLIVQVESRSGVDNAE
AIAATPGVDAIFVGPFDLSTETGHIGDPTHPEVQAMIRHTLDATHAAGKAAGILAPAEADARRYAQWGFDFIAVGIDISL
LRQAAMETVSRYKG

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=252, Percent_Identity=51.5873015873016, Blast_Score=261, Evalue=3e-71,
Organism=Escherichia coli, GI1789514, Length=249, Percent_Identity=49.3975903614458, Blast_Score=254, Evalue=4e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: 4.1.2.-

Molecular weight: Translated: 27076; Mature: 27076

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPRNPFKAALDGDTRYGCWAGFATGYAAEILATTGFDWLLIDGEHAPNIVPTTLAQLQ
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
ALAAYPCAPVVRTVNHDPALIKQLLDIGTQTLMIPMVDTAEQAAQLVAATRYPPHGFRGV
HHHHCCCHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCC
GGGLTRATRWGAVEDYMAQAHEELCLIVQVESRSGVDNAEAIAATPGVDAIFVGPFDLST
CCCHHHHHHCCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHEEECCCCCEEEECCCCCCC
ETGHIGDPTHPEVQAMIRHTLDATHAAGKAAGILAPAEADARRYAQWGFDFIAVGIDISL
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCEEEEEHHHHHH
LRQAAMETVSRYKG
HHHHHHHHHHHHCC
>Mature Secondary Structure
MQLPRNPFKAALDGDTRYGCWAGFATGYAAEILATTGFDWLLIDGEHAPNIVPTTLAQLQ
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
ALAAYPCAPVVRTVNHDPALIKQLLDIGTQTLMIPMVDTAEQAAQLVAATRYPPHGFRGV
HHHHCCCHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCC
GGGLTRATRWGAVEDYMAQAHEELCLIVQVESRSGVDNAEAIAATPGVDAIFVGPFDLST
CCCHHHHHHCCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHEEECCCCCEEEECCCCCCC
ETGHIGDPTHPEVQAMIRHTLDATHAAGKAAGILAPAEADARRYAQWGFDFIAVGIDISL
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCEEEEEHHHHHH
LRQAAMETVSRYKG
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA