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The map label for this gene is yfdC [H]

Identifier: 92114631

GI number: 92114631

Start: 2818423

End: 2819259

Strand: Direct

Name: yfdC [H]

Synonym: Csal_2513

Alternate gene names: 92114631

Gene position: 2818423-2819259 (Clockwise)

Preceding gene: 92114629

Following gene: 92114632

Centisome position: 76.24

GC content: 63.44

Gene sequence:

>837_bases
GTGAGCCAGCCTTCCAATCTCACACCGCCCAGCCGGGTGGAAGACGACGAGCACGACCTGCACCTCGAGGACGGCCCGCT
GCCCTCGCGAGCTGCCGCCGTTCACGAGTCGATCCGCGAGGAAGGCGAAACGGAACTGAAACGCGCCGCCTCGGCGCTGC
TGTGGTCGGCGATCGCCGCCGGCCTGTCGATGAGCTTCTCGATGCTCGCCAAGGGGTTGCTGCATGCACGACTGCCGGAT
AGCGACATCGGCTACCTGGTCGAGTCGCTGGGCTACACCATCGGGTTTCTCGTCGTGATCCTCGCCCGTCAGCAGCTGTT
CACCGAGAACACCGTCACGGCGGTGCTGCCGGTCATGAGCACGCCTCGCATCATGCAGTTCCTCAAGCTGTTGAAGCTGT
GGGGCGTGGTATTGGTCGGCAACCTGGTGGGGGTGGCCATCTCCGCATATGCCATTCTCTACATGCCCCTGTTCGACGCC
GAGACACACAAGGCCTTTCTCAGCCTGGGCCACCACATCATGGAGAACACCGGCGGTCAGATGTTTGCCAAGGGCATCGT
GGCGGGCTGGATGATCGCCACCATGGTATGGCTGCTCCCCGCCGCCGGCGGCGCCAAGATCTGGGTGATCCTGATCGTCA
CCTACCTCGTCGCGCTGGGCGGCTTCACGCACATCATCGTCGGCTCCACGGAGGTGATGTATCTGATGTTCGCCGGCCAG
GCCAACCTGGGCGAATACCTCTTTGACTTCGCCCTGCCGACACTGGCCGGCAACGTCATCGGCGGCACCTTCATCTTCGC
CCTCATCAGCCATGCCCAGATTCGCAGCGATAGCTGA

Upstream 100 bases:

>100_bases
CTTCTCCCGCATTATCGTCTATCGTGTCAGCATAGCGTCAGCCGTCGTATCTCACCGAATTCACGACGGTTTCTCCCATG
TCGACACAAGGATCTCCTGC

Downstream 100 bases:

>100_bases
CCCTGCCGGCCGGCGCTTGCCTGCGCCGGCCTTGTCCATTGGTCTATGCCCACACCTGCCACCGCTACCGGCAAGTCCCG
GTAGCGGCGACGTCACGCTC

Product: putative transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSQPSNLTPPSRVEDDEHDLHLEDGPLPSRAAAVHESIREEGETELKRAASALLWSAIAAGLSMSFSMLAKGLLHARLPD
SDIGYLVESLGYTIGFLVVILARQQLFTENTVTAVLPVMSTPRIMQFLKLLKLWGVVLVGNLVGVAISAYAILYMPLFDA
ETHKAFLSLGHHIMENTGGQMFAKGIVAGWMIATMVWLLPAAGGAKIWVILIVTYLVALGGFTHIIVGSTEVMYLMFAGQ
ANLGEYLFDFALPTLAGNVIGGTFIFALISHAQIRSDS

Sequences:

>Translated_278_residues
MSQPSNLTPPSRVEDDEHDLHLEDGPLPSRAAAVHESIREEGETELKRAASALLWSAIAAGLSMSFSMLAKGLLHARLPD
SDIGYLVESLGYTIGFLVVILARQQLFTENTVTAVLPVMSTPRIMQFLKLLKLWGVVLVGNLVGVAISAYAILYMPLFDA
ETHKAFLSLGHHIMENTGGQMFAKGIVAGWMIATMVWLLPAAGGAKIWVILIVTYLVALGGFTHIIVGSTEVMYLMFAGQ
ANLGEYLFDFALPTLAGNVIGGTFIFALISHAQIRSDS
>Mature_277_residues
SQPSNLTPPSRVEDDEHDLHLEDGPLPSRAAAVHESIREEGETELKRAASALLWSAIAAGLSMSFSMLAKGLLHARLPDS
DIGYLVESLGYTIGFLVVILARQQLFTENTVTAVLPVMSTPRIMQFLKLLKLWGVVLVGNLVGVAISAYAILYMPLFDAE
THKAFLSLGHHIMENTGGQMFAKGIVAGWMIATMVWLLPAAGGAKIWVILIVTYLVALGGFTHIIVGSTEVMYLMFAGQA
NLGEYLFDFALPTLAGNVIGGTFIFALISHAQIRSDS

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=258, Percent_Identity=58.1395348837209, Blast_Score=317, Evalue=8e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 30013; Mature: 29881

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPSNLTPPSRVEDDEHDLHLEDGPLPSRAAAVHESIREEGETELKRAASALLWSAIAA
CCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
GLSMSFSMLAKGLLHARLPDSDIGYLVESLGYTIGFLVVILARQQLFTENTVTAVLPVMS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
TPRIMQFLKLLKLWGVVLVGNLVGVAISAYAILYMPLFDAETHKAFLSLGHHIMENTGGQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
MFAKGIVAGWMIATMVWLLPAAGGAKIWVILIVTYLVALGGFTHIIVGSTEVMYLMFAGQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHEEEECCHHEEEEEECCC
ANLGEYLFDFALPTLAGNVIGGTFIFALISHAQIRSDS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPSNLTPPSRVEDDEHDLHLEDGPLPSRAAAVHESIREEGETELKRAASALLWSAIAA
CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
GLSMSFSMLAKGLLHARLPDSDIGYLVESLGYTIGFLVVILARQQLFTENTVTAVLPVMS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
TPRIMQFLKLLKLWGVVLVGNLVGVAISAYAILYMPLFDAETHKAFLSLGHHIMENTGGQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH
MFAKGIVAGWMIATMVWLLPAAGGAKIWVILIVTYLVALGGFTHIIVGSTEVMYLMFAGQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHEEEECCHHEEEEEECCC
ANLGEYLFDFALPTLAGNVIGGTFIFALISHAQIRSDS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]