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The map label for this gene is slyA [H]

Identifier: 92114513

GI number: 92114513

Start: 2686893

End: 2687342

Strand: Direct

Name: slyA [H]

Synonym: Csal_2395

Alternate gene names: 92114513

Gene position: 2686893-2687342 (Clockwise)

Preceding gene: 92114512

Following gene: 92114515

Centisome position: 72.68

GC content: 62.89

Gene sequence:

>450_bases
ATGCATCAGGATATCGGACTCAAACTGTCGCGCGTACCACGCCTGTGGCGCGCCATCCTCGACGAACGCCTCGCTCCCCT
GGAGCTGACGCAAACTCGTTGGGTGACGCTCTATCACCTGTCGAAAATGGGTGATGGCCAGCCACAATGCGATCTGGCCC
GCTCGATCGGGGTCGAGGCACCTTCCCTGGTCAGGACGCTCGATCAGTTGACCGAGCAAGGGCTGATCGAACGCCGCCCC
AGCGATGAGGATCGCCGCACCAAGCGTGTCTACCTCACCGCCAAGGCGACGCCGTTGCTCAAGAAGATCGAGACCGTGGT
CGAACAGGCGCGGGTCGAGATGCTCGAGGGCGTGAGCGATGAAGACGTCGACAAGCTGGACGCCATCCTCTCCTGCATCG
AGCGCAATGGGCAGCGACTGCAGTCGCGCGGCCCCTGCGACGATGAGTGA

Upstream 100 bases:

>100_bases
CGCGAACCGGGACGATGAATGAAGGTCGACGATAGTGTGACTTGCAATAGCGCGTCCCACTCGGGACAATCCCGTTAGGT
TCCTAACCAATACAAGGCCC

Downstream 100 bases:

>100_bases
CTCGAATCCCGCGGGTCGCTAGCCGCCTTCCGCGGCGGCGGCTCTCCCGGGCGTCGCGCCGGTTGCACACCCGGGCTCTG
GACGCCCAGGTCGCCACGCA

Product: transcriptional regulator SlyA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MHQDIGLKLSRVPRLWRAILDERLAPLELTQTRWVTLYHLSKMGDGQPQCDLARSIGVEAPSLVRTLDQLTEQGLIERRP
SDEDRRTKRVYLTAKATPLLKKIETVVEQARVEMLEGVSDEDVDKLDAILSCIERNGQRLQSRGPCDDE

Sequences:

>Translated_149_residues
MHQDIGLKLSRVPRLWRAILDERLAPLELTQTRWVTLYHLSKMGDGQPQCDLARSIGVEAPSLVRTLDQLTEQGLIERRP
SDEDRRTKRVYLTAKATPLLKKIETVVEQARVEMLEGVSDEDVDKLDAILSCIERNGQRLQSRGPCDDE
>Mature_149_residues
MHQDIGLKLSRVPRLWRAILDERLAPLELTQTRWVTLYHLSKMGDGQPQCDLARSIGVEAPSLVRTLDQLTEQGLIERRP
SDEDRRTKRVYLTAKATPLLKKIETVVEQARVEMLEGVSDEDVDKLDAILSCIERNGQRLQSRGPCDDE

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=144, Percent_Identity=47.9166666666667, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17004; Mature: 17004

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQDIGLKLSRVPRLWRAILDERLAPLELTQTRWVTLYHLSKMGDGQPQCDLARSIGVEA
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
PSLVRTLDQLTEQGLIERRPSDEDRRTKRVYLTAKATPLLKKIETVVEQARVEMLEGVSD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
EDVDKLDAILSCIERNGQRLQSRGPCDDE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHQDIGLKLSRVPRLWRAILDERLAPLELTQTRWVTLYHLSKMGDGQPQCDLARSIGVEA
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
PSLVRTLDQLTEQGLIERRPSDEDRRTKRVYLTAKATPLLKKIETVVEQARVEMLEGVSD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
EDVDKLDAILSCIERNGQRLQSRGPCDDE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA