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The map label for this gene is ybeY [C]

Identifier: 92114457

GI number: 92114457

Start: 2626410

End: 2626874

Strand: Direct

Name: ybeY [C]

Synonym: Csal_2336

Alternate gene names: 92114457

Gene position: 2626410-2626874 (Clockwise)

Preceding gene: 92114456

Following gene: 92114458

Centisome position: 71.05

GC content: 65.38

Gene sequence:

>465_bases
ATGACGCCCGACATCGATCGTCAGGTCGCCCTCGAGACGGCGACGGAACTTCTCCCCACCCAGGCCGATCTCGAGGCCTG
GGTGGGGGCCGTGCTGGCGCGTCATCCCGACACGGACCGCCACGAACTCAGCGTGCGCTTCGTGACGGCCGACGAGAGCC
AGGCGCTCAACCGCGATTACCGCGGCAAGGACAAGCCGACCAATGTGCTGTCCTTCCCCTTCGAGGCACCGCCCGGCCTC
CCCCTGGCGCTGCTCGGCGACCTGGCGATCTGCCACGCCGTGGTCGTCGACGAAGCCGCCGAGCAGGGCAAGCCGCTCGC
GCACCACTACGCCCATATGGTGATCCACGGCACCTTGCATTTGCTCGGCTACGATCATATAGATGATCGGGAAGCCGAAG
AGATGGAAGCCCTGGAGCGGGAATTACTGGCGCATTTCGCCATCGGTGATCCCTATGCCGAGTGA

Upstream 100 bases:

>100_bases
GCGCCGAGGAAGAACAGGAACGCACTCGCCGCGAGCGCCGCGCCCAGGCCAAGCGCGAAGAGAACGACGCGCGACGCGAC
AACGACGAGCCGACCAACGC

Downstream 100 bases:

>100_bases
ACCGCCGCCTGCCGGAACGGCCCCCGGCTTCCTCCGAAACGCGACCGCCGGCCGCGTCAGCATCTTATTACCCCAGCGTG
ATCGTCCATGAGGAACGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTPDIDRQVALETATELLPTQADLEAWVGAVLARHPDTDRHELSVRFVTADESQALNRDYRGKDKPTNVLSFPFEAPPGL
PLALLGDLAICHAVVVDEAAEQGKPLAHHYAHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPYAE

Sequences:

>Translated_154_residues
MTPDIDRQVALETATELLPTQADLEAWVGAVLARHPDTDRHELSVRFVTADESQALNRDYRGKDKPTNVLSFPFEAPPGL
PLALLGDLAICHAVVVDEAAEQGKPLAHHYAHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPYAE
>Mature_153_residues
TPDIDRQVALETATELLPTQADLEAWVGAVLARHPDTDRHELSVRFVTADESQALNRDYRGKDKPTNVLSFPFEAPPGLP
LALLGDLAICHAVVVDEAAEQGKPLAHHYAHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPYAE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=148, Percent_Identity=55.4054054054054, Blast_Score=151, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHRSD (Q1QV22)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_574385.1
- ProteinModelPortal:   Q1QV22
- SMR:   Q1QV22
- STRING:   Q1QV22
- GeneID:   4026295
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_2336
- NMPDR:   fig|290398.4.peg.2144
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGFLHLK
- BioCyc:   CSAL290398:CSAL_2336-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17047; Mature: 16916

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDIDRQVALETATELLPTQADLEAWVGAVLARHPDTDRHELSVRFVTADESQALNRDY
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHCCCC
RGKDKPTNVLSFPFEAPPGLPLALLGDLAICHAVVVDEAAEQGKPLAHHYAHMVIHGTLH
CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLGYDHIDDREAEEMEALERELLAHFAIGDPYAE
HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPDIDRQVALETATELLPTQADLEAWVGAVLARHPDTDRHELSVRFVTADESQALNRDY
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHCCCC
RGKDKPTNVLSFPFEAPPGLPLALLGDLAICHAVVVDEAAEQGKPLAHHYAHMVIHGTLH
CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLGYDHIDDREAEEMEALERELLAHFAIGDPYAE
HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA