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The map label for this gene is fliN [H]

Identifier: 92114086

GI number: 92114086

Start: 2220124

End: 2220651

Strand: Direct

Name: fliN [H]

Synonym: Csal_1963

Alternate gene names: 92114086

Gene position: 2220124-2220651 (Clockwise)

Preceding gene: 92114085

Following gene: 92114087

Centisome position: 60.06

GC content: 63.07

Gene sequence:

>528_bases
ATGACTGACCCCCAAAACCCAGACAAGAAAGGCACCGAGGACGAGTGGGCCGAGGCCATGGCGCAGCAGCAGGCCGAGGA
AGGCAACGATGAGACCTCCGACGACGCGGAAGAGGACCTTTGGGCCGCCGCGATGGCGGAGCAGCAGGCCACCGAGGACG
AAGCCAACGCCGAGGCGAGCGATCCCGCGCCGGACAAGTCCCAGGCGCAAAACGCCGATCACGAGGTGTTCAAGCCGCTC
GACGAGGGCGCCTCGTCTACCACGCCCCGCGATCTCGACCTGATCATGGACATCCCGGTCAAGCTCAGCGTGGAGCTGGG
CCGGACCAAGATCACCATCAAGCAGCTTCTCGAGCTCGCCCAGGGGTCCGTGATCGAGCTGGATGGCCTCGCCGGCGAGC
CCATGGACATCCTCATCAATGGCTACCTGATCGCGCAAGGGGAAGTCGTGGTCGTGGATGACAAGTACGGCATCCGCATC
ACGGAAATCATCACCCCGTCGGAACGCGTCAAAAAGCTGAACAAATGA

Upstream 100 bases:

>100_bases
ATGACGTGCGACTACGGCAGCCAGAAATCCCAGCGCGCCTTGCGCGTCAGGCACCTCATCGAACACGGCTCGAGCCAAGT
TGCAGCGAAGGATCCGAAAG

Downstream 100 bases:

>100_bases
GTGTCGCCGATAGCGCCCGCGAAGCGGCCGTGTCACTCGACGGTAGCGGCGACACCGTGATGGGCGCCGCCTGGATCGGC
AAGACCGCGCTCTCCTTGCT

Product: flagellar motor switch FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MTDPQNPDKKGTEDEWAEAMAQQQAEEGNDETSDDAEEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPL
DEGASSTTPRDLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVDDKYGIRI
TEIITPSERVKKLNK

Sequences:

>Translated_175_residues
MTDPQNPDKKGTEDEWAEAMAQQQAEEGNDETSDDAEEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPL
DEGASSTTPRDLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVDDKYGIRI
TEIITPSERVKKLNK
>Mature_174_residues
TDPQNPDKKGTEDEWAEAMAQQQAEEGNDETSDDAEEDLWAAAMAEQQATEDEANAEASDPAPDKSQAQNADHEVFKPLD
EGASSTTPRDLDLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVDDKYGIRIT
EIITPSERVKKLNK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=143, Percent_Identity=58.041958041958, Blast_Score=166, Evalue=1e-42,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 19092; Mature: 18961

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPQNPDKKGTEDEWAEAMAQQQAEEGNDETSDDAEEDLWAAAMAEQQATEDEANAEAS
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
DPAPDKSQAQNADHEVFKPLDEGASSTTPRDLDLIMDIPVKLSVELGRTKITIKQLLELA
CCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCEEHHHHHHHHHH
QGSVIELDGLAGEPMDILINGYLIAQGEVVVVDDKYGIRITEIITPSERVKKLNK
CCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC
>Mature Secondary Structure 
TDPQNPDKKGTEDEWAEAMAQQQAEEGNDETSDDAEEDLWAAAMAEQQATEDEANAEAS
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
DPAPDKSQAQNADHEVFKPLDEGASSTTPRDLDLIMDIPVKLSVELGRTKITIKQLLELA
CCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCEEHHHHHHHHHH
QGSVIELDGLAGEPMDILINGYLIAQGEVVVVDDKYGIRITEIITPSERVKKLNK
CCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]