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The map label for this gene is nqrD [H]

Identifier: 92113696

GI number: 92113696

Start: 1792116

End: 1792790

Strand: Direct

Name: nqrD [H]

Synonym: Csal_1572

Alternate gene names: 92113696

Gene position: 1792116-1792790 (Clockwise)

Preceding gene: 92113695

Following gene: 92113697

Centisome position: 48.48

GC content: 60.15

Gene sequence:

>675_bases
ATGGCTGCTGAGTCCGTAAAAGACGTTGTTCTCTCGCCAGTCTTCAAGAACAACCCGATCGCGCTGCAGGTGCTGGGGAT
CTGTTCGGCACTGGCGGTGACCAACTCCATGAGTGTGTCGTTGGTCATGGGCCTGGCCGTCATCGCGGTCACGGCGTGTT
CCAACCTGTTCGTTTCGTTGATCCGTCAGCACATTCCGTCGTCGATCCGCATCATCGTGCAGATGACCATCATTGCCTCG
CTGGTCATCGTGGTCGATCAGGTGCTCAAGGCATATGCCTACGAGATGTCCAAGCAGCTGTCGGTCTTCGTCGGTCTGAT
CATCACCAACTGCATCGTGATGGGGCGCGCCGAAGCCTACGCCATGCAGAACGGGCCGGTGATGAGCTTCCTCGACGGCG
TCGGCAACGGCCTGGGTTACGCGGTGATCCTGCTGATCGTCGGCTTCGTGCGTGAGCTGTTCGGGTCGGGCAGTGTGTTC
GGCTTCACGGTCCTGACGCCGGTTCAGGACGGTGGCTGGTACGTGCCCAACGGCCTGATGCTGCTGCCGCCGTCGGCGTT
CTTCGTCATCGGCCTGATCATCTGGGTGCTGCGCAGCGTGCGTACCGAGCAGGTCGAGAAGACCGAATACCGGATCGTGG
CCAACAGCAAGGCCAAGATTAAGGAGTCCGTGTGA

Upstream 100 bases:

>100_bases
CCAGTCGTGGCGTCACCAACATGCTGCATTTCTGGCTGAGCGAGAGTGGCTTCGGGCCTTATCTCGCCCGCTTCCACGGC
AACTCCGAAGGAGCGTGAAC

Downstream 100 bases:

>100_bases
TGTTCGAGCATTACCTGAGCCTCTTCGTCAAGGCAGTGTTCGTGGAGAACATGGCACTGGCCTTCTTCCTGGGCATGTGC
ACGTTCCTTGCCGTTTCCAA

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAAESVKDVVLSPVFKNNPIALQVLGICSALAVTNSMSVSLVMGLAVIAVTACSNLFVSLIRQHIPSSIRIIVQMTIIAS
LVIVVDQVLKAYAYEMSKQLSVFVGLIITNCIVMGRAEAYAMQNGPVMSFLDGVGNGLGYAVILLIVGFVRELFGSGSVF
GFTVLTPVQDGGWYVPNGLMLLPPSAFFVIGLIIWVLRSVRTEQVEKTEYRIVANSKAKIKESV

Sequences:

>Translated_224_residues
MAAESVKDVVLSPVFKNNPIALQVLGICSALAVTNSMSVSLVMGLAVIAVTACSNLFVSLIRQHIPSSIRIIVQMTIIAS
LVIVVDQVLKAYAYEMSKQLSVFVGLIITNCIVMGRAEAYAMQNGPVMSFLDGVGNGLGYAVILLIVGFVRELFGSGSVF
GFTVLTPVQDGGWYVPNGLMLLPPSAFFVIGLIIWVLRSVRTEQVEKTEYRIVANSKAKIKESV
>Mature_223_residues
AAESVKDVVLSPVFKNNPIALQVLGICSALAVTNSMSVSLVMGLAVIAVTACSNLFVSLIRQHIPSSIRIIVQMTIIASL
VIVVDQVLKAYAYEMSKQLSVFVGLIITNCIVMGRAEAYAMQNGPVMSFLDGVGNGLGYAVILLIVGFVRELFGSGSVFG
FTVLTPVQDGGWYVPNGLMLLPPSAFFVIGLIIWVLRSVRTEQVEKTEYRIVANSKAKIKESV

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=38.423645320197, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24059; Mature: 23928

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAESVKDVVLSPVFKNNPIALQVLGICSALAVTNSMSVSLVMGLAVIAVTACSNLFVSL
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IRQHIPSSIRIIVQMTIIASLVIVVDQVLKAYAYEMSKQLSVFVGLIITNCIVMGRAEAY
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMQNGPVMSFLDGVGNGLGYAVILLIVGFVRELFGSGSVFGFTVLTPVQDGGWYVPNGLM
HCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCEE
LLPPSAFFVIGLIIWVLRSVRTEQVEKTEYRIVANSKAKIKESV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHCCC
>Mature Secondary Structure 
AAESVKDVVLSPVFKNNPIALQVLGICSALAVTNSMSVSLVMGLAVIAVTACSNLFVSL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IRQHIPSSIRIIVQMTIIASLVIVVDQVLKAYAYEMSKQLSVFVGLIITNCIVMGRAEAY
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AMQNGPVMSFLDGVGNGLGYAVILLIVGFVRELFGSGSVFGFTVLTPVQDGGWYVPNGLM
HCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEECCCCEE
LLPPSAFFVIGLIIWVLRSVRTEQVEKTEYRIVANSKAKIKESV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA