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The map label for this gene is nlpC [H]

Identifier: 92113419

GI number: 92113419

Start: 1479525

End: 1480142

Strand: Direct

Name: nlpC [H]

Synonym: Csal_1293

Alternate gene names: 92113419

Gene position: 1479525-1480142 (Clockwise)

Preceding gene: 92113418

Following gene: 92113420

Centisome position: 40.02

GC content: 64.89

Gene sequence:

>618_bases
ATGCTTCGAATCATGGCGCTGGGCTTGCTGTTGTCGGTACTGGCCGGCTGTGCAGCGACGTCCCCGCAATCTCCTGCTGC
ACACCCGTCTTCCCTGTCGGCCGCCGCCCGGATCGGCGAAGCGGCGAATGGCATGACGGGACCCGAATCGCTTCTCGCCA
CGTACCGTGCCAGCGATGTCCAGCGCGCCCTGGTGTCGCCGGCGCGCATACGCGAGGCCTTGCTGTCCGAGCACGAACGC
TGGGTGGGGACGCCCTATCGTCTCGGTGGCACCACGCGGCGTGGTATCGACTGTTCCGCCTTGATGCAACACGTCTACAG
CGATGCGTTCCAGCTGTCCCTGCCGCGCACCACCGACCAGCAGATGCAGGAAGGCCGCCGCATCTCGCGTGATGCGCTGA
AGGCCGGCGACCTGGTGTTCTTCCGCTCGCCCGGCCCCTACAACCATGTAGGCGTCTATGTCGGCGATGGCTATTTCTTG
CACGCATCGACCTCGCAGGGCGTCAAGCTTTCCCGTCTCGACAACGTCTATTGGAATCGTCATTACTGGCAGTCACGGCG
TCCGCTGGAGAGCACGCAACTTGCGGCACGGCTCGAGCGGTCTGCGCACGAGGGCTGA

Upstream 100 bases:

>100_bases
GCCAGGCTGTGCCTAGGTGGCAGGGCGTGTCATTGCGTTCGTGCAAGCGCTCCGAGGCATCCAGCGAGGTTGAACGACGT
GTGATGATGAGGTCGCTTGG

Downstream 100 bases:

>100_bases
CGAGCACTGACGGCGTGTCGCAGCTGTGTGCCTCGAGACGGCCTGAGGCATGATCTCACTTTTGCGCGCGATCATGTTGC
GCTAATGGAGGGCATGATGA

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLRIMALGLLLSVLAGCAATSPQSPAAHPSSLSAAARIGEAANGMTGPESLLATYRASDVQRALVSPARIREALLSEHER
WVGTPYRLGGTTRRGIDCSALMQHVYSDAFQLSLPRTTDQQMQEGRRISRDALKAGDLVFFRSPGPYNHVGVYVGDGYFL
HASTSQGVKLSRLDNVYWNRHYWQSRRPLESTQLAARLERSAHEG

Sequences:

>Translated_205_residues
MLRIMALGLLLSVLAGCAATSPQSPAAHPSSLSAAARIGEAANGMTGPESLLATYRASDVQRALVSPARIREALLSEHER
WVGTPYRLGGTTRRGIDCSALMQHVYSDAFQLSLPRTTDQQMQEGRRISRDALKAGDLVFFRSPGPYNHVGVYVGDGYFL
HASTSQGVKLSRLDNVYWNRHYWQSRRPLESTQLAARLERSAHEG
>Mature_205_residues
MLRIMALGLLLSVLAGCAATSPQSPAAHPSSLSAAARIGEAANGMTGPESLLATYRASDVQRALVSPARIREALLSEHER
WVGTPYRLGGTTRRGIDCSALMQHVYSDAFQLSLPRTTDQQMQEGRRISRDALKAGDLVFFRSPGPYNHVGVYVGDGYFL
HASTSQGVKLSRLDNVYWNRHYWQSRRPLESTQLAARLERSAHEG

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=171, Percent_Identity=36.8421052631579, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788001, Length=117, Percent_Identity=50.4273504273504, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787944, Length=184, Percent_Identity=32.0652173913043, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1786421, Length=127, Percent_Identity=36.2204724409449, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 22509; Mature: 22509

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIMALGLLLSVLAGCAATSPQSPAAHPSSLSAAARIGEAANGMTGPESLLATYRASDV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QRALVSPARIREALLSEHERWVGTPYRLGGTTRRGIDCSALMQHVYSDAFQLSLPRTTDQ
HHHHHCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCCHH
QMQEGRRISRDALKAGDLVFFRSPGPYNHVGVYVGDGYFLHASTSQGVKLSRLDNVYWNR
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCEEEECCCCCCEEHHHHHHHHHHH
HYWQSRRPLESTQLAARLERSAHEG
HHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRIMALGLLLSVLAGCAATSPQSPAAHPSSLSAAARIGEAANGMTGPESLLATYRASDV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QRALVSPARIREALLSEHERWVGTPYRLGGTTRRGIDCSALMQHVYSDAFQLSLPRTTDQ
HHHHHCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCCHH
QMQEGRRISRDALKAGDLVFFRSPGPYNHVGVYVGDGYFLHASTSQGVKLSRLDNVYWNR
HHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCEEEECCCCCCEEHHHHHHHHHHH
HYWQSRRPLESTQLAARLERSAHEG
HHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]