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The map label for this gene is sufD [C]

Identifier: 92113361

GI number: 92113361

Start: 1413918

End: 1415255

Strand: Direct

Name: sufD [C]

Synonym: Csal_1235

Alternate gene names: 92113361

Gene position: 1413918-1415255 (Clockwise)

Preceding gene: 92113360

Following gene: 92113362

Centisome position: 38.25

GC content: 63.98

Gene sequence:

>1338_bases
ATGAGTGCAGCACACGCCTTTCTACAACGGCTCGGCGAGCGATTCAGCGACGAGCCGACCTGGGTGACGGCACGTCGTCA
GGCCGGTGCAGCGCGCTTCGAGGCTCTGGGATTTCCCACCAAGCGTGATGAAGCCTGGAAATACACCGACGTGCGTCGTA
TTGCCGAAGGCGAGTTCGCGCTGACCTATGATGCCGAACTGAGCGCGTCGCGCTTCGAAGCGCTGTCCATGCCGCTGGAT
GCCTATCGTCTGGTATTCGTCGATGGCGTCTTCTCGACCGCGCTTTCCGATGTCGAGGCACTGCCCGAGGGGATCAGCAT
CGAGCCGTTGACCACGGCGATGCGTACCAACCACGAGGCCATCGGGGGGGCCATCGGCCGCCTGGCCGGTGTCGATTTCT
CGCCGTTCACCGCACTCAACGTGGCGCTTTCCGAAGAAGGCGCGGTCGTGCGCATCGGCCAGGGCGTGGTCGTCGACAAG
CCGATCTACGTGGTCTTCGCTTCACGGGCCAACGAGGCGCCACGCATGAGCCATCCGCGCGTGCTGGTCATGGCTGGTGC
GCGCAGTCAGTCGACGGTGATCGAGCATTACGCCGGCGAAACGGGTGCGGCCAACTTCACCAACGTGGTCAGTGAGGTCA
TGCTCGAGCGTGGCGCGATCGTCGATCATTACAAGCTGCAGGAGGCCTCGAGCGAGGACCTGCACGTGGCGAGCATCCAT
GTGGAGCAGGCGCGCGATTCGCGCTTCACCTCCTTCAACCTCAACCTGGGGGGCGCGCTGGTGCGCACCGACCTGGTGAC
GGATCTCAACGCGCAGGGTGCCGAGGCCAACTACAATGGCCTGTTCTTCGTGCAAGGGCGCCAGCACGTCGACAATCACA
CCCTGGTCAATCACAACGCGCCGCAAACGTTCTCCAACGAGAATTACAAGGGCATTCTCAACGACCGTGCCCGCGGAGTG
TTCAACGGCAAGGTGATCGTCAAGCGCGACAGCCAGCAGATCGAGGCGTATCAGAACAACGCCAACCTGCTGTTGTCCGA
TCGTGCCGAGATCGATACCAAGCCGGAGCTGGAAATCTACGCCGATGACGTCAAGTGCTCGCACGGCACGACGACGGGCC
AGCTCGACGAGGAGGCCGTCTTCGCGTTGCGCACGCGCGGCATCGACGAGCAGATGGCGCGTGGCCTGCTGACGCTGGCC
TTCGCCGGCGAGGTCATGGACCAGGTGCGCCTGCCCGCCATCGCCGAGCGCGTCGAGCGCGCCGTGGCCGGGAAGCTGCC
CGAGCGTTTCAATCTTGCGGACCTGGTTGAGGTGTCCGACGCCCTGCAGGAGGCCTGA

Upstream 100 bases:

>100_bases
ACGTCCTGGTGGACGGGCGCATCGTCAAGTCCGGCGACAAGAACCTCGCCCACGAGCTCGAAACGCGGGGTTATGAATGG
GTGCTGGAGGAGTCTGTCGC

Downstream 100 bases:

>100_bases
CATCATGAACGCCCTTTCCGAGCCGATGCTGGACGTGGCCCGTGTCCGCCGTGACTTTCCGATTCTCGAGCGGGAAGTGC
ATGGCAAGCCGCTGATCTAT

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSAAHAFLQRLGERFSDEPTWVTARRQAGAARFEALGFPTKRDEAWKYTDVRRIAEGEFALTYDAELSASRFEALSMPLD
AYRLVFVDGVFSTALSDVEALPEGISIEPLTTAMRTNHEAIGGAIGRLAGVDFSPFTALNVALSEEGAVVRIGQGVVVDK
PIYVVFASRANEAPRMSHPRVLVMAGARSQSTVIEHYAGETGAANFTNVVSEVMLERGAIVDHYKLQEASSEDLHVASIH
VEQARDSRFTSFNLNLGGALVRTDLVTDLNAQGAEANYNGLFFVQGRQHVDNHTLVNHNAPQTFSNENYKGILNDRARGV
FNGKVIVKRDSQQIEAYQNNANLLLSDRAEIDTKPELEIYADDVKCSHGTTTGQLDEEAVFALRTRGIDEQMARGLLTLA
FAGEVMDQVRLPAIAERVERAVAGKLPERFNLADLVEVSDALQEA

Sequences:

>Translated_445_residues
MSAAHAFLQRLGERFSDEPTWVTARRQAGAARFEALGFPTKRDEAWKYTDVRRIAEGEFALTYDAELSASRFEALSMPLD
AYRLVFVDGVFSTALSDVEALPEGISIEPLTTAMRTNHEAIGGAIGRLAGVDFSPFTALNVALSEEGAVVRIGQGVVVDK
PIYVVFASRANEAPRMSHPRVLVMAGARSQSTVIEHYAGETGAANFTNVVSEVMLERGAIVDHYKLQEASSEDLHVASIH
VEQARDSRFTSFNLNLGGALVRTDLVTDLNAQGAEANYNGLFFVQGRQHVDNHTLVNHNAPQTFSNENYKGILNDRARGV
FNGKVIVKRDSQQIEAYQNNANLLLSDRAEIDTKPELEIYADDVKCSHGTTTGQLDEEAVFALRTRGIDEQMARGLLTLA
FAGEVMDQVRLPAIAERVERAVAGKLPERFNLADLVEVSDALQEA
>Mature_444_residues
SAAHAFLQRLGERFSDEPTWVTARRQAGAARFEALGFPTKRDEAWKYTDVRRIAEGEFALTYDAELSASRFEALSMPLDA
YRLVFVDGVFSTALSDVEALPEGISIEPLTTAMRTNHEAIGGAIGRLAGVDFSPFTALNVALSEEGAVVRIGQGVVVDKP
IYVVFASRANEAPRMSHPRVLVMAGARSQSTVIEHYAGETGAANFTNVVSEVMLERGAIVDHYKLQEASSEDLHVASIHV
EQARDSRFTSFNLNLGGALVRTDLVTDLNAQGAEANYNGLFFVQGRQHVDNHTLVNHNAPQTFSNENYKGILNDRARGVF
NGKVIVKRDSQQIEAYQNNANLLLSDRAEIDTKPELEIYADDVKCSHGTTTGQLDEEAVFALRTRGIDEQMARGLLTLAF
AGEVMDQVRLPAIAERVERAVAGKLPERFNLADLVEVSDALQEA

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=393, Percent_Identity=31.8066157760814, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI87081955, Length=352, Percent_Identity=21.3068181818182, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 48727; Mature: 48596

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAHAFLQRLGERFSDEPTWVTARRQAGAARFEALGFPTKRDEAWKYTDVRRIAEGEFA
CCHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCEE
LTYDAELSASRFEALSMPLDAYRLVFVDGVFSTALSDVEALPEGISIEPLTTAMRTNHEA
EEECCCCCHHHHHHHCCCHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
IGGAIGRLAGVDFSPFTALNVALSEEGAVVRIGQGVVVDKPIYVVFASRANEAPRMSHPR
HHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCCCE
VLVMAGARSQSTVIEHYAGETGAANFTNVVSEVMLERGAIVDHYKLQEASSEDLHVASIH
EEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEE
VEQARDSRFTSFNLNLGGALVRTDLVTDLNAQGAEANYNGLFFVQGRQHVDNHTLVNHNA
EEHHCCCCEEEEECCCCCCEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCC
PQTFSNENYKGILNDRARGVFNGKVIVKRDSQQIEAYQNNANLLLSDRAEIDTKPELEIY
CCCCCCCCCCEEECCCCCEEECCEEEEEECHHHHHHHHCCCCEEEECCCCCCCCCCEEEE
ADDVKCSHGTTTGQLDEEAVFALRTRGIDEQMARGLLTLAFAGEVMDQVRLPAIAERVER
ECCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AVAGKLPERFNLADLVEVSDALQEA
HHHHCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAAHAFLQRLGERFSDEPTWVTARRQAGAARFEALGFPTKRDEAWKYTDVRRIAEGEFA
CHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCEE
LTYDAELSASRFEALSMPLDAYRLVFVDGVFSTALSDVEALPEGISIEPLTTAMRTNHEA
EEECCCCCHHHHHHHCCCHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
IGGAIGRLAGVDFSPFTALNVALSEEGAVVRIGQGVVVDKPIYVVFASRANEAPRMSHPR
HHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCCCE
VLVMAGARSQSTVIEHYAGETGAANFTNVVSEVMLERGAIVDHYKLQEASSEDLHVASIH
EEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEE
VEQARDSRFTSFNLNLGGALVRTDLVTDLNAQGAEANYNGLFFVQGRQHVDNHTLVNHNA
EEHHCCCCEEEEECCCCCCEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCC
PQTFSNENYKGILNDRARGVFNGKVIVKRDSQQIEAYQNNANLLLSDRAEIDTKPELEIY
CCCCCCCCCCEEECCCCCEEECCEEEEEECHHHHHHHHCCCCEEEECCCCCCCCCCEEEE
ADDVKCSHGTTTGQLDEEAVFALRTRGIDEQMARGLLTLAFAGEVMDQVRLPAIAERVER
ECCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AVAGKLPERFNLADLVEVSDALQEA
HHHHCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]