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The map label for this gene is yhcS [C]

Identifier: 92113336

GI number: 92113336

Start: 1383800

End: 1384696

Strand: Direct

Name: yhcS [C]

Synonym: Csal_1210

Alternate gene names: 92113336

Gene position: 1383800-1384696 (Clockwise)

Preceding gene: 92113333

Following gene: 92113337

Centisome position: 37.43

GC content: 62.43

Gene sequence:

>897_bases
GTGACCACACTGGATGCATTGCGGGTGTTCGTCGAGGTCGTGCGGGCAGGCAGCTTTACGGCGGCGGCGCGGCGTCTGAG
CATTTCCAAGTCGCTGGCCTCCAAGCGCGTGGCGGCGCTGGAGGATGAGTTGAGCGTCAACTTGCTCAACCGGTCGACCC
GCTCGTTGCGTCTGACCGAGGCCGGGCAGATCTATTACGAGCACGGGCTTCGCGTCATCGAGGAACTGCAGTCGGCGGAA
GCTCAGGTGCAGTCGGTCACATCACAGCCCCGCGGCCAGCTCAAGGTCAGTGCCCAGGTCAGTTTCGGGTTCATGTACCT
GGCGGCGCCTACCACGGCCTTCATGCGGCGGTACCCTGACGTGTCGGTGGAAATTCTGCTCGAGGACCAGCGTTTCGAGC
CTATCGACGATTCAGTGGATCTGGCCATCCGCATGGGGCCCTTGCCGCCATCCAGCCTGGTGTCGCGTCCCTTGTGCAAG
GTGGTGTACGGCCTGTATGCCGCCCCTGATTACCTGGCACGTGCCGGCCGCCCCCTGCATCCACGGGATATTGCCGACTA
CGATACGGTGTTCTACGGCAACTATGACCTCGGCGCCCATTGGCGTTTTTCCTTGAATGGTCAGCCGTTGGACATCGAGC
CCAATTCACGCCTGGTGATCAATAATCTGTTGGGTGTCGTGGAGGCCGCGAAGTCAGGCTTCGGGCTGGCGTACCTGCCG
ACGTTCGCGGCACGCGCGGCGGTGGAGGAGGGGCAGCTCATTCCGCTGCTTCAGCCTTACTGGAACGAGCATGGCAGCAT
GCTGGTGCTGTTCCGCTCGCGCAAGTACCTGCCCGACAAGACCCGGGCCTATCTGGATTTCATCACCGACTGGTTTCGCG
AGCACCTGGCGTTGTGA

Upstream 100 bases:

>100_bases
GGCGGCGTCAGTATAGGCAGTCGGCCTTTGCGTAATAAGAGGGTACAATCGAAAACTAGTGTTTCCGATTTAGAAACAGA
AGCGTGAGAGAGGCATTGTC

Downstream 100 bases:

>100_bases
CGCCTCGCGTGACATCGAGCTTCGGTCTCGCCGGCGTTTGGCCCGGTGGTGCTGATGCCGGATAGGCGCATGCGTATAAT
GGTGCCATCGTCAATCACCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTTLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAGQIYYEHGLRVIEELQSAE
AQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVSVEILLEDQRFEPIDDSVDLAIRMGPLPPSSLVSRPLCK
VVYGLYAAPDYLARAGRPLHPRDIADYDTVFYGNYDLGAHWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYLP
TFAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFREHLAL

Sequences:

>Translated_298_residues
MTTLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAGQIYYEHGLRVIEELQSAE
AQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVSVEILLEDQRFEPIDDSVDLAIRMGPLPPSSLVSRPLCK
VVYGLYAAPDYLARAGRPLHPRDIADYDTVFYGNYDLGAHWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYLP
TFAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFREHLAL
>Mature_297_residues
TTLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTEAGQIYYEHGLRVIEELQSAEA
QVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPDVSVEILLEDQRFEPIDDSVDLAIRMGPLPPSSLVSRPLCKV
VYGLYAAPDYLARAGRPLHPRDIADYDTVFYGNYDLGAHWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYLPT
FAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFREHLAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=34.3537414965986, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.4246575342466, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.1095890410959, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=27.3333333333333, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=28.2312925170068, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=261, Percent_Identity=26.0536398467433, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=28.7425149700599, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786448, Length=302, Percent_Identity=28.1456953642384, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787601, Length=123, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790011, Length=302, Percent_Identity=20.8609271523179, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=300, Percent_Identity=23, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=24.8175182481752, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=256, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=271, Percent_Identity=25.830258302583, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=262, Percent_Identity=24.8091603053435, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=156, Percent_Identity=31.4102564102564, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33415; Mature: 33283

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
AGQIYYEHGLRVIEELQSAEAQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCHHHHHHHHCCC
VSVEILLEDQRFEPIDDSVDLAIRMGPLPPSSLVSRPLCKVVYGLYAAPDYLARAGRPLH
CEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PRDIADYDTVFYGNYDLGAHWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYLP
CCCCCCCCEEEECCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEHHH
TFAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFREHLAL
HHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTLDALRVFVEVVRAGSFTAAARRLSISKSLASKRVAALEDELSVNLLNRSTRSLRLTE
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
AGQIYYEHGLRVIEELQSAEAQVQSVTSQPRGQLKVSAQVSFGFMYLAAPTTAFMRRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCHHHHHHHHCCC
VSVEILLEDQRFEPIDDSVDLAIRMGPLPPSSLVSRPLCKVVYGLYAAPDYLARAGRPLH
CEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PRDIADYDTVFYGNYDLGAHWRFSLNGQPLDIEPNSRLVINNLLGVVEAAKSGFGLAYLP
CCCCCCCCEEEECCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEHHH
TFAARAAVEEGQLIPLLQPYWNEHGSMLVLFRSRKYLPDKTRAYLDFITDWFREHLAL
HHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]