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The map label for this gene is recD [H]

Identifier: 92113297

GI number: 92113297

Start: 1342207

End: 1344174

Strand: Direct

Name: recD [H]

Synonym: Csal_1170

Alternate gene names: 92113297

Gene position: 1342207-1344174 (Clockwise)

Preceding gene: 92113296

Following gene: 92113298

Centisome position: 36.31

GC content: 70.17

Gene sequence:

>1968_bases
ATGAGCCCAGACCAATACACGCTGGCACTGGATGCCTCGCCGGGCATGAGCCGGGAGTCGCTCTTCGAGAGTCTGGCCTG
GTGGGAAGCGCTGGGCTGGCTGCGTCCCCTGGATGCGCATTTCGCGCGCTTTCTGGCGGAACACGATGCCCGGGCGCCGG
TCGAGGTATTGCTGGCGGCGGCCCTGGCCAGCCACCAACTGGGGCGCGGACATGTCTGCCTGACCCTGCCGCGGGCACTC
GCTGCTCCGCGCGACGTGCTGTCGTTGCCGCCTCTGGAAGAGGACGCTCCGCACGAGTCGGTCCCGTTGCCGGACGACTT
CCTGCGCGGTCTGGAGAGCGCGACCTGGGCCGCGCGGCTGGCCGAGTCGCCGCTGGTGGCGTCGCCCGGGCCGGGCACCA
CGCCCTTGGTGCTGGTCGGCGAACGTCTGTACCTGCGGCGCTACTGGCGCGCCGAGCAGGCCGTGGCCACGCACCTCGGC
GCGCGTCTGGGGCGCCCGTTGCCGGTGGAGGCCTCGCTGGCCGCACCATTGGCGCGGCTGTTCTCGGCCAATGGCGCCTC
GGAGGACGCGCCGGACTGGCAGAAGGTGGCCTGTACGCTGGCGTTGCGCAACCGGTTGACGATCATCTCCGGTGGTCCCG
GAACCGGCAAGACGACGACGGTGACGCGCTTGCTGGCATTGCTCCAGACGCAGGCGCTGGCGGCCTCCCGAGGCGAGCGT
GCGCTGCGCATTCAACTGGCGGCGCCCACCGGCAAGGCGGCGGCGCGCTTGTCCGAGTCCATCGCCGGCGCCATGAGCGG
TCTGGATGTCGAAGCCGACGTGGCGGCGACGCTACCGCGCGAGGCGCTGACGCTGCATCGGCTGCTGGGCGCTCGTCCCG
ATACGCGACAGTTTCGCCATCACGCGGGGCAACCGCTGAGCCTCGACCTGCTGGTGGTGGACGAGGCCTCGATGGTTGAC
CTGGAACTGATGGCGGCGCTGCTCGAGGCCCTGCCCGACGAGGCGCGCCTGATCCTGCTCGGCGACAAGGACCAGCTTGC
CTCGGTGGAGGCCGGCTCGGTGCTGGGCGATCTCTGCGCCAATGCGCTGGACCAGGGCTATTCGCCGGCCGCCTGCGAAG
TGCTGTCGCAACTGGCGGATACCGACATGACGCCCGACCCGGCATGTTCGCCGCTGGCAGACCACGTCGTCATGCTGCGC
AAGAGTTTCCGCTTCGACGCGCACAGCGGTATCGGTGCCCTGGCCGCGGCCACCAACGACGGCGATGTCGCGGCCTTCCG
CCAGGCCTGGCAAGCGCAGTACACGGACATCCAGTGGCTGGCATCCTCGAACGCCCAGCGCGAGGTCGAGCGTGCCGCCT
TGGCGGGGTATCGCGATTTTTATCGCCGCGTGCGCGACGGGGCGTCCCCGGCCGACGTGCTGGCGCGGTTGAACGACTTT
CAGGTGCTGTGCGCCCTCAAGCGCGGGCCCTGGGGTGTCGAGGGGCTCAATGCCCGTATCGCCGCCGGCCTGTGGCGTGA
AGGCTGGATCGAGGACCCGCAAGGCTGGTATGCCGGGCGCCCGGTGATGGTGACGCGCAACGACCCGCAGCTGGGGCTCT
ACAATGGCGATATCGGCATCGCCCTGCCGGATGCCGAGGCGGGGCGGCGCCTGCGTGTGTTCTTCGCGACTGCCGGTGGC
GTCCGGGCCGTGCTGCCATCGCGGCTCGACGCCTGCGAGACGGTATTCGCGATGACGGTGCACAAGTCGCAAGGCTCCGA
GTTCACGCACGTGATGTTCGTGCTGCCCGAACGCGCCAATCCGATCCTGACCCGCGAGCTGGTGTATACCGGCATCACTC
GGGCCAGGCAGCGCTTGACGCTGGCCGGGGGCGGCGCGAGCGTCGTCGAGAGTGCTCTGACGCGACGCGTGGTGCGCGAC
AGCGGGTTCGCCGAGTGGGTGGCGGCCCTGGACTGGCCGAGGGATTGA

Upstream 100 bases:

>100_bases
CGTTGCGTGCGACACTGGAAGAGAGTGCGGCGCCACGTGCGCAGCGGCATGACATCGAGGCAGCCATGACACAGGCATCG
TCAGCAACCCGGAGCAGCCC

Downstream 100 bases:

>100_bases
GGGCCGCGGTTCGACCGTTTCGACCGAGAGGACAAGGACATGGAGGCATCAACGCCTGGAGACAGCGCGCCCGGCGGCAC
CGACTGGGCGTCACTGAGCA

Product: DNA helicase/exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 655; Mature: 654

Protein sequence:

>655_residues
MSPDQYTLALDASPGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRAL
AAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLVGERLYLRRYWRAEQAVATHLG
ARLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACTLALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGER
ALRIQLAAPTGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLDLLVVDEASMVD
LELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLADTDMTPDPACSPLADHVVMLR
KSFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDIQWLASSNAQREVERAALAGYRDFYRRVRDGASPADVLARLNDF
QVLCALKRGPWGVEGLNARIAAGLWREGWIEDPQGWYAGRPVMVTRNDPQLGLYNGDIGIALPDAEAGRRLRVFFATAGG
VRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRLTLAGGGASVVESALTRRVVRD
SGFAEWVAALDWPRD

Sequences:

>Translated_655_residues
MSPDQYTLALDASPGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRAL
AAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLVGERLYLRRYWRAEQAVATHLG
ARLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACTLALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGER
ALRIQLAAPTGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLDLLVVDEASMVD
LELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLADTDMTPDPACSPLADHVVMLR
KSFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDIQWLASSNAQREVERAALAGYRDFYRRVRDGASPADVLARLNDF
QVLCALKRGPWGVEGLNARIAAGLWREGWIEDPQGWYAGRPVMVTRNDPQLGLYNGDIGIALPDAEAGRRLRVFFATAGG
VRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRLTLAGGGASVVESALTRRVVRD
SGFAEWVAALDWPRD
>Mature_654_residues
SPDQYTLALDASPGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRALA
APRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLVGERLYLRRYWRAEQAVATHLGA
RLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACTLALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGERA
LRIQLAAPTGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLDLLVVDEASMVDL
ELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLADTDMTPDPACSPLADHVVMLRK
SFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDIQWLASSNAQREVERAALAGYRDFYRRVRDGASPADVLARLNDFQ
VLCALKRGPWGVEGLNARIAAGLWREGWIEDPQGWYAGRPVMVTRNDPQLGLYNGDIGIALPDAEAGRRLRVFFATAGGV
RAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRLTLAGGGASVVESALTRRVVRDS
GFAEWVAALDWPRD

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=623, Percent_Identity=46.8699839486356, Blast_Score=428, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 70507; Mature: 70376

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPDQYTLALDASPGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAA
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
ALASHQLGRGHVCLTLPRALAAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARL
HHHHHCCCCCCEEEECHHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AESPLVASPGPGTTPLVLVGERLYLRRYWRAEQAVATHLGARLGRPLPVEASLAAPLARL
HCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
FSANGASEDAPDWQKVACTLALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGER
HHCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
ALRIQLAAPTGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRH
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHH
HAGQPLSLDLLVVDEASMVDLELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCA
HCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHH
NALDQGYSPAACEVLSQLADTDMTPDPACSPLADHVVMLRKSFRFDAHSGIGALAAATND
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GDVAAFRQAWQAQYTDIQWLASSNAQREVERAALAGYRDFYRRVRDGASPADVLARLNDF
CHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
QVLCALKRGPWGVEGLNARIAAGLWREGWIEDPQGWYAGRPVMVTRNDPQLGLYNGDIGI
HEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEECCEEE
ALPDAEAGRRLRVFFATAGGVRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERAN
ECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCC
PILTRELVYTGITRARQRLTLAGGGASVVESALTRRVVRDSGFAEWVAALDWPRD
CHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SPDQYTLALDASPGMSRESLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAA
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
ALASHQLGRGHVCLTLPRALAAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARL
HHHHHCCCCCCEEEECHHHHCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AESPLVASPGPGTTPLVLVGERLYLRRYWRAEQAVATHLGARLGRPLPVEASLAAPLARL
HCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
FSANGASEDAPDWQKVACTLALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGER
HHCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
ALRIQLAAPTGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRH
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHH
HAGQPLSLDLLVVDEASMVDLELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCA
HCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHH
NALDQGYSPAACEVLSQLADTDMTPDPACSPLADHVVMLRKSFRFDAHSGIGALAAATND
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
GDVAAFRQAWQAQYTDIQWLASSNAQREVERAALAGYRDFYRRVRDGASPADVLARLNDF
CHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
QVLCALKRGPWGVEGLNARIAAGLWREGWIEDPQGWYAGRPVMVTRNDPQLGLYNGDIGI
HEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEECCEEE
ALPDAEAGRRLRVFFATAGGVRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERAN
ECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCC
PILTRELVYTGITRARQRLTLAGGGASVVESALTRRVVRDSGFAEWVAALDWPRD
CHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]