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The map label for this gene is yeeY [H]

Identifier: 92113263

GI number: 92113263

Start: 1296080

End: 1297003

Strand: Direct

Name: yeeY [H]

Synonym: Csal_1136

Alternate gene names: 92113263

Gene position: 1296080-1297003 (Clockwise)

Preceding gene: 92113260

Following gene: 92113264

Centisome position: 35.06

GC content: 65.26

Gene sequence:

>924_bases
ATGAAAAATGTCACATTGGCGCAATGGCGCATGCTGGCCGCCGTGGTCGATCATGGCGGGTTCGCGCGTGCCGCCGAGGC
CGTGCACAAGAGTCCTTCCACGCTCAACCACGCGGTGCACAAGCTCGAGGAGCAATTGGGAATCCGCGTTCTGGAACCGG
TGGGACGTCAGGTGCGCTTGACCGAGTCAGGCGCGATGCTGTTGCGGCGTGCCCGCCAGTTGCTGGAAAGCGCCGAAGCC
CTCGAGGATGTCGCCGGGCGTCTGGCCGAAGGGCTCGAAGCCGAGGTCGTGCTCGCGGTGGACCAGATCTTCCCGCCGGA
TGCCTTGGCGCATGCGCTGGATGCCGTCTCGCGGGAATATCCGCATGTCCGCGTTCAGCTGCATGAAACCGTGCTCAATG
GCGGCATCGAAATGCTCTATGACGGGCGCGCCGACCTGGTGGTATCGGGTATCGCCGCGCAAGGATTTCTGGGCGAGCCC
CTGGTCAACGTGACGTTCCTGGCGGTATCGCATCCCGACCATCCCTTGCAGCATCTGGGGCGCGAGCTCGATTTGCGCGA
TCTGGAGCAGCATCGCCAGCTGGTGGTGCGCGACTCGGCCCTCCGCCAGTCGATGGATGCCGGGTGGCTCAAGGCCGAGC
AGCGCTGGACGCTGAGTCATCTGGAGACCTCGCTCGACATGTTGTGCCGGGGGCTGGGGTTCGCCTGGATGCCGACGACC
CGCATTCGGGATGCCTTGCGCCAGGGCACGCTGGTGCCGCTGCCGCTCACCGTGGGAGGGCGTCGCGAGGTGCCGATACA
GTTGATCTTCCGCGATCGGGATCGTGCAGGACCGGCGACACGCGCGACGGCACGCTCACTGCATGATGCGGTGGCGCGCT
GCTGTGACGAGCATTCGACAGAAACGAACGGTCGGGCCACTTAA

Upstream 100 bases:

>100_bases
ATGGGACATGGAAAATCTCCTTTACTTTTGTCTAGCATTCTAGTTCGGATTTTTCGAAAATTAATCGCATATTGTTGGCT
TCTTGCTTCGAGTATTTCGA

Downstream 100 bases:

>100_bases
ATGCGCTTGAGCTTCGATGGCATCGTTTTATGCTGAGCGCTGTCGAGAGTGGTCGTGCGTCGCCCACTCGTTTTCCGATG
ACGCATTCATTGCGTTCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKNVTLAQWRMLAAVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRLTESGAMLLRRARQLLESAEA
LEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREYPHVRVQLHETVLNGGIEMLYDGRADLVVSGIAAQGFLGEP
LVNVTFLAVSHPDHPLQHLGRELDLRDLEQHRQLVVRDSALRQSMDAGWLKAEQRWTLSHLETSLDMLCRGLGFAWMPTT
RIRDALRQGTLVPLPLTVGGRREVPIQLIFRDRDRAGPATRATARSLHDAVARCCDEHSTETNGRAT

Sequences:

>Translated_307_residues
MKNVTLAQWRMLAAVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRLTESGAMLLRRARQLLESAEA
LEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREYPHVRVQLHETVLNGGIEMLYDGRADLVVSGIAAQGFLGEP
LVNVTFLAVSHPDHPLQHLGRELDLRDLEQHRQLVVRDSALRQSMDAGWLKAEQRWTLSHLETSLDMLCRGLGFAWMPTT
RIRDALRQGTLVPLPLTVGGRREVPIQLIFRDRDRAGPATRATARSLHDAVARCCDEHSTETNGRAT
>Mature_307_residues
MKNVTLAQWRMLAAVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRLTESGAMLLRRARQLLESAEA
LEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREYPHVRVQLHETVLNGGIEMLYDGRADLVVSGIAAQGFLGEP
LVNVTFLAVSHPDHPLQHLGRELDLRDLEQHRQLVVRDSALRQSMDAGWLKAEQRWTLSHLETSLDMLCRGLGFAWMPTT
RIRDALRQGTLVPLPLTVGGRREVPIQLIFRDRDRAGPATRATARSLHDAVARCCDEHSTETNGRAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=247, Percent_Identity=31.9838056680162, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789492, Length=255, Percent_Identity=29.0196078431373, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=26.0135135135135, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1786713, Length=268, Percent_Identity=25.3731343283582, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787949, Length=250, Percent_Identity=26, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786508, Length=240, Percent_Identity=22.5, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=25.2066115702479, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788748, Length=252, Percent_Identity=24.6031746031746, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=26.1324041811847, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI145693193, Length=270, Percent_Identity=24.0740740740741, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787879, Length=266, Percent_Identity=26.3157894736842, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33912; Mature: 33912

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVTLAQWRMLAAVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCEEEE
TESGAMLLRRARQLLESAEALEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCC
PHVRVQLHETVLNGGIEMLYDGRADLVVSGIAAQGFLGEPLVNVTFLAVSHPDHPLQHLG
CCEEEEHHHHHHHCCCEEEECCCHHHEEECHHHCCCCCCCCCEEEEEEEECCCCHHHHCC
RELDLRDLEQHRQLVVRDSALRQSMDAGWLKAEQRWTLSHLETSLDMLCRGLGFAWMPTT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
RIRDALRQGTLVPLPLTVGGRREVPIQLIFRDRDRAGPATRATARSLHDAVARCCDEHST
HHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ETNGRAT
CCCCCCC
>Mature Secondary Structure
MKNVTLAQWRMLAAVVDHGGFARAAEAVHKSPSTLNHAVHKLEEQLGIRVLEPVGRQVRL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCEEEE
TESGAMLLRRARQLLESAEALEDVAGRLAEGLEAEVVLAVDQIFPPDALAHALDAVSREY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCHHHHHHHHHHHHHCC
PHVRVQLHETVLNGGIEMLYDGRADLVVSGIAAQGFLGEPLVNVTFLAVSHPDHPLQHLG
CCEEEEHHHHHHHCCCEEEECCCHHHEEECHHHCCCCCCCCCEEEEEEEECCCCHHHHCC
RELDLRDLEQHRQLVVRDSALRQSMDAGWLKAEQRWTLSHLETSLDMLCRGLGFAWMPTT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
RIRDALRQGTLVPLPLTVGGRREVPIQLIFRDRDRAGPATRATARSLHDAVARCCDEHST
HHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ETNGRAT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]