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The map label for this gene is ydfH [H]

Identifier: 92113204

GI number: 92113204

Start: 1215702

End: 1216370

Strand: Direct

Name: ydfH [H]

Synonym: Csal_1076

Alternate gene names: 92113204

Gene position: 1215702-1216370 (Clockwise)

Preceding gene: 92113203

Following gene: 92113205

Centisome position: 32.89

GC content: 56.65

Gene sequence:

>669_bases
ATGATGAAAGGGGTGCAGGAGCGGTCGTCGAGTGATCGTGCCTATAGCGATATACGCGACAAGATCATCACCACCGTACT
GAAACCCGGTGAAAGGATTCATGAAAAAGCGCTTTCGGAAGAGTTCGGCATCAGCCGCACGCCGATTCGCGAAGCCCTGA
TGCGACTGCGCTACGACGGCTTCGTCGATATCTTCGCTCAGCGCGGCACCTTCGTGACGCCCATCCGCCTCGATGTCATC
AAGGCGGCTCACTACACGCGCTCGGTGCTGGAATGCGCCCTGATACGCGATGCCGCCATGCAATGCAGCGACCGCGATGC
TCGAGATCTGTACGACAACCTCGAGCATCAGCGGCTCGTGTATCGGCAAGGGCAGTACTACAAGATCGAAACCCTCGACG
AAGAGCTTCATCAGAAGATTGCCGACATCGCGGGGCAACCCTCAGTCTGGCAAATCATTTACCACGTTCAGCTGCATATC
AACCGAGTGCGGATGCTGTTTCTCAACGAAGAGCGCGTGCCCGCCATCGTCGAGGAACACACGCGGATCATCGACGCCAT
CGCCAACCGCGATCCCGACGCTGCGGAAAGCGCCATGAAAGCGCATTTGCAGTACATGGACGAGAACATCCAGAAACTCG
CCGAAAGCTACTCGGAATATCTGTCTTGA

Upstream 100 bases:

>100_bases
CGATGCCTGCGCGCCGCAAACGGTTAGCCCCGCCTAGGGCGGCAGGGTAGGATGGGCGGTAACAGAGCGTAATCTGCCGG
GTCAGCCAGGAGCCAAAAGC

Downstream 100 bases:

>100_bases
GAAGGATTTGCCCTGCGCTGATTTATTATCGATCAGCCTAGGTGGCGTGCTGTAAGCTTACATTGGTAAGCGTGTTGATA
TACTGATGGTTTTAAAGGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MMKGVQERSSSDRAYSDIRDKIITTVLKPGERIHEKALSEEFGISRTPIREALMRLRYDGFVDIFAQRGTFVTPIRLDVI
KAAHYTRSVLECALIRDAAMQCSDRDARDLYDNLEHQRLVYRQGQYYKIETLDEELHQKIADIAGQPSVWQIIYHVQLHI
NRVRMLFLNEERVPAIVEEHTRIIDAIANRDPDAAESAMKAHLQYMDENIQKLAESYSEYLS

Sequences:

>Translated_222_residues
MMKGVQERSSSDRAYSDIRDKIITTVLKPGERIHEKALSEEFGISRTPIREALMRLRYDGFVDIFAQRGTFVTPIRLDVI
KAAHYTRSVLECALIRDAAMQCSDRDARDLYDNLEHQRLVYRQGQYYKIETLDEELHQKIADIAGQPSVWQIIYHVQLHI
NRVRMLFLNEERVPAIVEEHTRIIDAIANRDPDAAESAMKAHLQYMDENIQKLAESYSEYLS
>Mature_222_residues
MMKGVQERSSSDRAYSDIRDKIITTVLKPGERIHEKALSEEFGISRTPIREALMRLRYDGFVDIFAQRGTFVTPIRLDVI
KAAHYTRSVLECALIRDAAMQCSDRDARDLYDNLEHQRLVYRQGQYYKIETLDEELHQKIADIAGQPSVWQIIYHVQLHI
NRVRMLFLNEERVPAIVEEHTRIIDAIANRDPDAAESAMKAHLQYMDENIQKLAESYSEYLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=30.622009569378, Blast_Score=120, Evalue=6e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25856; Mature: 25856

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKGVQERSSSDRAYSDIRDKIITTVLKPGERIHEKALSEEFGISRTPIREALMRLRYDG
CCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
FVDIFAQRGTFVTPIRLDVIKAAHYTRSVLECALIRDAAMQCSDRDARDLYDNLEHQRLV
HHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YRQGQYYKIETLDEELHQKIADIAGQPSVWQIIYHVQLHINRVRMLFLNEERVPAIVEEH
HHCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
TRIIDAIANRDPDAAESAMKAHLQYMDENIQKLAESYSEYLS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKGVQERSSSDRAYSDIRDKIITTVLKPGERIHEKALSEEFGISRTPIREALMRLRYDG
CCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH
FVDIFAQRGTFVTPIRLDVIKAAHYTRSVLECALIRDAAMQCSDRDARDLYDNLEHQRLV
HHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
YRQGQYYKIETLDEELHQKIADIAGQPSVWQIIYHVQLHINRVRMLFLNEERVPAIVEEH
HHCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHH
TRIIDAIANRDPDAAESAMKAHLQYMDENIQKLAESYSEYLS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]