| Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
|---|---|
| Accession | NC_007963 |
| Length | 3,696,649 |
Click here to switch to the map view.
The map label for this gene is foxA [H]
Identifier: 92113173
GI number: 92113173
Start: 1176552
End: 1178651
Strand: Direct
Name: foxA [H]
Synonym: Csal_1045
Alternate gene names: 92113173
Gene position: 1176552-1178651 (Clockwise)
Preceding gene: 92113167
Following gene: 92113176
Centisome position: 31.83
GC content: 59.62
Gene sequence:
>2100_bases ATGTCCCGTTCCCGTCCCTCGCCCCTGCCTTTCAACGTGCTGTCGTCGCCGGCTCGCCGCATGGCGATGGCGACGCTGCT GCTCGGCTGCCCGCTAGCGGCGCAGGCACAAGACGACGTCGCCCAGAGCGATACCGTGGTCGTGACCGCGACGGCGCTGA AGGTTGCCACGCCGCCCATGGAAACCCCGCGTGCCGTGTCCCAGGTGGGACGTGAAGAACTCGACAAGCGTGCCGTCAAT AGTTACGACGAGACCTTCCGCTACCGCAGCGGGGTGCAGTCGGCACCTTATGGCAGTGACAACGGCGTCGACTGGTTCAA CATTCGCGGTTTCAGCGGCGAGGATTCGACTTATCAGGATGGATTGCGCCTTTTCCGCGAGGGCGGCTATTTCTGGTGGG TGACCGAGCCCTTCGGCCTCGAACGTGTCGATCTGCTCAAGGGGCCAGCCTCGATTCTTTACGGTGAAGCGCCTCCCGGC GGTGTGGTGAACGCGATCAGCAAGCGGCCCACCGAAGAAGCGCAAGGGCTGTTCGAGATCCAGGGGGGTAACAAGGATCA TCGTCAGGTCGGTATCGATACCTCCGGTCCGGTCGCCGGCACCGACGACATGCGCTATCGCATGGTGGGGCTCTTTCGCG AGGGCGATGGAGAGCTGGATCACACCGACAATCAGCGAGTGTATCTGGCACCGAGCCTGGCGGTGGATCTTTCCGACGCC ACCACCGTGACCTTTCTGGCCAGCTACATGAAGGATCATGGTACGCCCAGCAAGGGCTTTCGACCGGTGGCGGGCTCGCT GGAGGGCACCGAGTTCGGGCATATCGGCCGCGAGACCAACCTGGGAGAACCGGATTACGAGCGTCAGGAACGCGAGCAGA TTTCCCTGGGCTATGAGCTCGAGCATGATATCGACGAGACCTGGCAGTTCCAGCAGAATCTGCGCTACAACAGCATGGAC TTGCTACTTCGCTCGCTCTCTCCTTTTACCGCGCTCAATCCGGACGGCCGCACGGTGGGCCGTTACTTGACGTATCGCGA TGGTAGCTACGATTCCTTTACCGTGGACAATCGCCTGGTAGGCAAGTGGTTTACCGCGAATACTGAAAATACGCTGTTGC TGGGGGTCGATTACCAGCACTTCGATGTCGATTATCAAAACGGTGATGGCACGGGGGACTTCTCGGGTTTCGATGTGTTC GATCCGGAGTATGGCAACTATTCGCCAGGCACCTTGCAGTACCAAGCCGAAGAGAAAAAGGAGCAGATCGGCGTCTACAT CCAGGATCAGTTGCGCCTGGGAGACCGCTGGATTCTGCTGGGTGGCGTGCGTCACGACTCGGCTAGCGTGGAAAGCTACA GCGACGCTCCCAACGCGTCGGATTATGATGAAACCGAGAACCAGCTGTCGTTCAGCGGCGGCGTGATGTATCTCGGCGAT TATGGTGTCTCGCCTTATCTAAGCTACAGCGAATCATTCAGCCCGCAAGTCGGGCGCGGGCCGGATGGTCAGGCCTACGA ACCCAGCGAGGGTGAGCAATGGGAAGCCGGGGTCAAGTACACGCCCGATTGGCTGGATGGTTACATGACCGCCGCCGTGT TCGACCTCAAGGAAACCAATACCCTGTATACGGATGCGCAGTTCATTCAGTCGCAAGGCGGTGAACGTCATTCACAAGGT TTCGAGCTGGAAGGTGTTGGCTATCTGACCGAACAGCTCCAGCTGACGGCTTCTTACACTTACCTGGATACGACTATCGA AGATCCCGAGCGTGGGGAGTTCCGTGCCGGCTTGACGCCGCGTCACCAGGCCTCGCTATGGCTGGATTACGGCTTTGAGA GTGGTGCCCTGCAAGGGCTGGATGTCGGTGCCGGGGCGCGTTATGTGGGCGAGAGCGTCAATGCCGCTCCCGATCGTGAC GATGAAGTCTCTTCCTATACCGTGTACGACGCCATGGCCAGCTACGAGATCAACTCTGCGTGGACGGCACAGGTCAATGT CACCAACCTGACGGACAAGGAGTACATCCGCGGGTGCGACTCCTGGTGCTACTACGGCGAGTCACGCAGCGTGATCGGTA GTCTCAAGTACCGTTGGTAA
Upstream 100 bases:
>100_bases CGTTATTGTGAAAACAAATCACAATTCTTATCATGTGCGAAAGGCTTTGCTCCAAGCTTCGCTCCTGTCATCCGCTAATA ACATGCCACAAGGAAACTCG
Downstream 100 bases:
>100_bases GCGGGAAACTTTAAGACGCCGGAAAGAGGCGAGAAGAAAATGGCCCGAGGTGCTGCAAGGCACCTCGGGCCTTTTTTATG TCTGCTTTGCTTCGGTCCGG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 699; Mature: 698
Protein sequence:
>699_residues MSRSRPSPLPFNVLSSPARRMAMATLLLGCPLAAQAQDDVAQSDTVVVTATALKVATPPMETPRAVSQVGREELDKRAVN SYDETFRYRSGVQSAPYGSDNGVDWFNIRGFSGEDSTYQDGLRLFREGGYFWWVTEPFGLERVDLLKGPASILYGEAPPG GVVNAISKRPTEEAQGLFEIQGGNKDHRQVGIDTSGPVAGTDDMRYRMVGLFREGDGELDHTDNQRVYLAPSLAVDLSDA TTVTFLASYMKDHGTPSKGFRPVAGSLEGTEFGHIGRETNLGEPDYERQEREQISLGYELEHDIDETWQFQQNLRYNSMD LLLRSLSPFTALNPDGRTVGRYLTYRDGSYDSFTVDNRLVGKWFTANTENTLLLGVDYQHFDVDYQNGDGTGDFSGFDVF DPEYGNYSPGTLQYQAEEKKEQIGVYIQDQLRLGDRWILLGGVRHDSASVESYSDAPNASDYDETENQLSFSGGVMYLGD YGVSPYLSYSESFSPQVGRGPDGQAYEPSEGEQWEAGVKYTPDWLDGYMTAAVFDLKETNTLYTDAQFIQSQGGERHSQG FELEGVGYLTEQLQLTASYTYLDTTIEDPERGEFRAGLTPRHQASLWLDYGFESGALQGLDVGAGARYVGESVNAAPDRD DEVSSYTVYDAMASYEINSAWTAQVNVTNLTDKEYIRGCDSWCYYGESRSVIGSLKYRW
Sequences:
>Translated_699_residues MSRSRPSPLPFNVLSSPARRMAMATLLLGCPLAAQAQDDVAQSDTVVVTATALKVATPPMETPRAVSQVGREELDKRAVN SYDETFRYRSGVQSAPYGSDNGVDWFNIRGFSGEDSTYQDGLRLFREGGYFWWVTEPFGLERVDLLKGPASILYGEAPPG GVVNAISKRPTEEAQGLFEIQGGNKDHRQVGIDTSGPVAGTDDMRYRMVGLFREGDGELDHTDNQRVYLAPSLAVDLSDA TTVTFLASYMKDHGTPSKGFRPVAGSLEGTEFGHIGRETNLGEPDYERQEREQISLGYELEHDIDETWQFQQNLRYNSMD LLLRSLSPFTALNPDGRTVGRYLTYRDGSYDSFTVDNRLVGKWFTANTENTLLLGVDYQHFDVDYQNGDGTGDFSGFDVF DPEYGNYSPGTLQYQAEEKKEQIGVYIQDQLRLGDRWILLGGVRHDSASVESYSDAPNASDYDETENQLSFSGGVMYLGD YGVSPYLSYSESFSPQVGRGPDGQAYEPSEGEQWEAGVKYTPDWLDGYMTAAVFDLKETNTLYTDAQFIQSQGGERHSQG FELEGVGYLTEQLQLTASYTYLDTTIEDPERGEFRAGLTPRHQASLWLDYGFESGALQGLDVGAGARYVGESVNAAPDRD DEVSSYTVYDAMASYEINSAWTAQVNVTNLTDKEYIRGCDSWCYYGESRSVIGSLKYRW >Mature_698_residues SRSRPSPLPFNVLSSPARRMAMATLLLGCPLAAQAQDDVAQSDTVVVTATALKVATPPMETPRAVSQVGREELDKRAVNS YDETFRYRSGVQSAPYGSDNGVDWFNIRGFSGEDSTYQDGLRLFREGGYFWWVTEPFGLERVDLLKGPASILYGEAPPGG VVNAISKRPTEEAQGLFEIQGGNKDHRQVGIDTSGPVAGTDDMRYRMVGLFREGDGELDHTDNQRVYLAPSLAVDLSDAT TVTFLASYMKDHGTPSKGFRPVAGSLEGTEFGHIGRETNLGEPDYERQEREQISLGYELEHDIDETWQFQQNLRYNSMDL LLRSLSPFTALNPDGRTVGRYLTYRDGSYDSFTVDNRLVGKWFTANTENTLLLGVDYQHFDVDYQNGDGTGDFSGFDVFD PEYGNYSPGTLQYQAEEKKEQIGVYIQDQLRLGDRWILLGGVRHDSASVESYSDAPNASDYDETENQLSFSGGVMYLGDY GVSPYLSYSESFSPQVGRGPDGQAYEPSEGEQWEAGVKYTPDWLDGYMTAAVFDLKETNTLYTDAQFIQSQGGERHSQGF ELEGVGYLTEQLQLTASYTYLDTTIEDPERGEFRAGLTPRHQASLWLDYGFESGALQGLDVGAGARYVGESVNAAPDRDD EVSSYTVYDAMASYEINSAWTAQVNVTNLTDKEYIRGCDSWCYYGESRSVIGSLKYRW
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=764, Percent_Identity=31.9371727748691, Blast_Score=321, Evalue=9e-89, Organism=Escherichia coli, GI1787344, Length=706, Percent_Identity=22.5212464589235, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1787024, Length=762, Percent_Identity=22.8346456692913, Blast_Score=123, Evalue=4e-29, Organism=Escherichia coli, GI1788478, Length=202, Percent_Identity=29.2079207920792, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77755; Mature: 77623
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSRPSPLPFNVLSSPARRMAMATLLLGCPLAAQAQDDVAQSDTVVVTATALKVATPPM CCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEEEECCCCC ETPRAVSQVGREELDKRAVNSYDETFRYRSGVQSAPYGSDNGVDWFNIRGFSGEDSTYQD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH GLRLFREGGYFWWVTEPFGLERVDLLKGPASILYGEAPPGGVVNAISKRPTEEAQGLFEI HHHHHHCCCEEEEECCCCCCCHHHHHCCCHHEEECCCCCCHHHHHHHCCCCHHHCCEEEE QGGNKDHRQVGIDTSGPVAGTDDMRYRMVGLFREGDGELDHTDNQRVYLAPSLAVDLSDA CCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCEEEECCCC TTVTFLASYMKDHGTPSKGFRPVAGSLEGTEFGHIGRETNLGEPDYERQEREQISLGYEL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEECCEEE EHDIDETWQFQQNLRYNSMDLLLRSLSPFTALNPDGRTVGRYLTYRDGSYDSFTVDNRLV CCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCEECCEEEEECCCCCEEEECCEEE GKWFTANTENTLLLGVDYQHFDVDYQNGDGTGDFSGFDVFDPEYGNYSPGTLQYQAEEKK EEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHH EQIGVYIQDQLRLGDRWILLGGVRHDSASVESYSDAPNASDYDETENQLSFSGGVMYLGD HHCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEC YGVSPYLSYSESFSPQVGRGPDGQAYEPSEGEQWEAGVKYTPDWLDGYMTAAVFDLKETN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCC TLYTDAQFIQSQGGERHSQGFELEGVGYLTEQLQLTASYTYLDTTIEDPERGEFRAGLTP EEEHHHHHHHHCCCCCCCCCCCCCCCHHEEEEEEEEEEEEEEECCCCCCCCCCEECCCCC RHQASLWLDYGFESGALQGLDVGAGARYVGESVNAAPDRDDEVSSYTVYDAMASYEINSA CCCCEEEEEECCCCCCCCCEECCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHEECCCE WTAQVNVTNLTDKEYIRGCDSWCYYGESRSVIGSLKYRW EEEEEEEECCCCHHHHHCCCHHEEECCCCCEEEEEEECC >Mature Secondary Structure SRSRPSPLPFNVLSSPARRMAMATLLLGCPLAAQAQDDVAQSDTVVVTATALKVATPPM CCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEEEECCCCC ETPRAVSQVGREELDKRAVNSYDETFRYRSGVQSAPYGSDNGVDWFNIRGFSGEDSTYQD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH GLRLFREGGYFWWVTEPFGLERVDLLKGPASILYGEAPPGGVVNAISKRPTEEAQGLFEI HHHHHHCCCEEEEECCCCCCCHHHHHCCCHHEEECCCCCCHHHHHHHCCCCHHHCCEEEE QGGNKDHRQVGIDTSGPVAGTDDMRYRMVGLFREGDGELDHTDNQRVYLAPSLAVDLSDA CCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCEEEECCCC TTVTFLASYMKDHGTPSKGFRPVAGSLEGTEFGHIGRETNLGEPDYERQEREQISLGYEL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEECCEEE EHDIDETWQFQQNLRYNSMDLLLRSLSPFTALNPDGRTVGRYLTYRDGSYDSFTVDNRLV CCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCCEECCEEEEECCCCCEEEECCEEE GKWFTANTENTLLLGVDYQHFDVDYQNGDGTGDFSGFDVFDPEYGNYSPGTLQYQAEEKK EEEEECCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHH EQIGVYIQDQLRLGDRWILLGGVRHDSASVESYSDAPNASDYDETENQLSFSGGVMYLGD HHCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEC YGVSPYLSYSESFSPQVGRGPDGQAYEPSEGEQWEAGVKYTPDWLDGYMTAAVFDLKETN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCC TLYTDAQFIQSQGGERHSQGFELEGVGYLTEQLQLTASYTYLDTTIEDPERGEFRAGLTP EEEHHHHHHHHCCCCCCCCCCCCCCCHHEEEEEEEEEEEEEEECCCCCCCCCCEECCCCC RHQASLWLDYGFESGALQGLDVGAGARYVGESVNAAPDRDDEVSSYTVYDAMASYEINSA CCCCEEEEEECCCCCCCCCEECCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHEECCCE WTAQVNVTNLTDKEYIRGCDSWCYYGESRSVIGSLKYRW EEEEEEEECCCCHHHHHCCCHHEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]