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The map label for this gene is dnaQ [H]

Identifier: 92113107

GI number: 92113107

Start: 1097939

End: 1098664

Strand: Direct

Name: dnaQ [H]

Synonym: Csal_0979

Alternate gene names: 92113107

Gene position: 1097939-1098664 (Clockwise)

Preceding gene: 92113106

Following gene: 92113110

Centisome position: 29.7

GC content: 65.01

Gene sequence:

>726_bases
ATGAAAAGATCGTCCTCACGCCATTCGAAAACGCCTGCCACCTGGGCGGACTATTTCACCGCACGTCGCGAGCAGACACG
CGTGCCGGCACTCGAGCGGTATTTCGCCGCTGGCGCGCCGGCACCGGACACGCCGCTTGGCGAGGTGCCGATGATGGCCA
TGGACATGGAGACCACCGGTCTCGATGAACAGCGTCACGCCATCGTCAGTATCGGCCTGGTGCCGTTCGACCTGCGGCGT
ATCCGCATGGCGCAGCGCCGGTACTGGATCGTGCGCCCGCCGCGCCCGTTGAGCGAGCGCTCGATCACTTTTCATCACAT
CACTCACACCGAGATCGAGCAGGCGCCGGACCTCGACGAGATCCTCGACGAGCTGCTAGAGGCCATGGCCGGGCATGTCA
TGGTGGTGCATTACCGGCATATCGAACGCACCTTTCTGAATGCGGCCGTCAAGGCGCGGCGTGGCGAGGGGATCCACTTC
CCGGTGATCGATACCATGTCGCTGGAAGCACGCCTGCACCGCCAGCCCTTGTGGGCGCGCTTTCGGCGCTGGATGGGGCG
TCCACCGGCCTCGATCCGGCTGCCCGACAGTCGCACGCGCTATGGGCTGCCGCCTTATCAGGCGCACCATGCCCTGATCG
ACGCCCTCGCCACTGCGGAGCTGCTGCAGGCACAGATCGCGCATCACTATCGCCCGGACACGCCGTTGAGCGAGGTATGG
AACTGA

Upstream 100 bases:

>100_bases
GAGCGACACAACCTCAAGGATGCCTTTCAGGTCCTCAGCAACGCGCAGAAGTTCCTCAAGTTCCGTTATCCCATGCCCTC
GCAGAAGCGCTGATCGCTGA

Downstream 100 bases:

>100_bases
ACGCGGCAGGAGCTTGGCGAGACGGTATTTGACGAGACGATATTTGACGAGACGACAGCCGGACGAGTCGCGGACCGACG
TCGCAACGCAAGAAGGCGGC

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKRSSSRHSKTPATWADYFTARREQTRVPALERYFAAGAPAPDTPLGEVPMMAMDMETTGLDEQRHAIVSIGLVPFDLRR
IRMAQRRYWIVRPPRPLSERSITFHHITHTEIEQAPDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHF
PVIDTMSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQIAHHYRPDTPLSEVW
N

Sequences:

>Translated_241_residues
MKRSSSRHSKTPATWADYFTARREQTRVPALERYFAAGAPAPDTPLGEVPMMAMDMETTGLDEQRHAIVSIGLVPFDLRR
IRMAQRRYWIVRPPRPLSERSITFHHITHTEIEQAPDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHF
PVIDTMSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQIAHHYRPDTPLSEVW
N
>Mature_241_residues
MKRSSSRHSKTPATWADYFTARREQTRVPALERYFAAGAPAPDTPLGEVPMMAMDMETTGLDEQRHAIVSIGLVPFDLRR
IRMAQRRYWIVRPPRPLSERSITFHHITHTEIEQAPDLDEILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHF
PVIDTMSLEARLHRQPLWARFRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQIAHHYRPDTPLSEVW
N

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 27868; Mature: 27868

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSSRHSKTPATWADYFTARREQTRVPALERYFAAGAPAPDTPLGEVPMMAMDMETTG
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC
LDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEIEQAPDLDE
CCHHHHEEEEECCCCHHHHHHHHHHHCEEEECCCCCCCCCCEEEEECCHHHHHHCCCHHH
ILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDTMSLEARLHRQPLWAR
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCHHHHH
FRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQIAHHYRPDTPLSEVW
HHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
N
C
>Mature Secondary Structure
MKRSSSRHSKTPATWADYFTARREQTRVPALERYFAAGAPAPDTPLGEVPMMAMDMETTG
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC
LDEQRHAIVSIGLVPFDLRRIRMAQRRYWIVRPPRPLSERSITFHHITHTEIEQAPDLDE
CCHHHHEEEEECCCCHHHHHHHHHHHCEEEECCCCCCCCCCEEEEECCHHHHHHCCCHHH
ILDELLEAMAGHVMVVHYRHIERTFLNAAVKARRGEGIHFPVIDTMSLEARLHRQPLWAR
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCHHHHH
FRRWMGRPPASIRLPDSRTRYGLPPYQAHHALIDALATAELLQAQIAHHYRPDTPLSEVW
HHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]