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The map label for this gene is ylaB [C]

Identifier: 92113022

GI number: 92113022

Start: 1005530

End: 1007347

Strand: Direct

Name: ylaB [C]

Synonym: Csal_0894

Alternate gene names: 92113022

Gene position: 1005530-1007347 (Clockwise)

Preceding gene: 92113021

Following gene: 92113023

Centisome position: 27.2

GC content: 64.52

Gene sequence:

>1818_bases
ATGAACGTCATGGGGAATTGGCCTAATGGGGCCATGACCCATCCGTGCCCTCCAGCTTCCACTACCGAGGCGACCGATCC
GAGTCTGTCGGCCATCGTGCGGGAAGGGCGTATCGACGTCCATTTTCAGCCGATCGTGGCCATTCGGTCGGGGCGTGTCT
TCGCCTACGAGGCATTGTCGCGTGGCCCGCACGATACCGTATACGCGCATCCGCTGACCATGTTCGAGGCGGCACGCAAG
CAGTCGCTGCTCGCCCCGCTCGAAGCGGTATGCCGTCATCGTGCGATCACGGCCTGGGCCGACCAGGAGCTCGATGAACT
GTTGTTCATCAACGTGTCGCCGGAAGTCCTGCTCGATCCAAAACACCGCAGTGGCGAAACCCTGCGCCTGTTGACGCGAC
TCGGCATTCCGCCGCATCGCTTGGTGATAGAGCTCACCGAGCAGTCCCCGGGCATCGATCCCGATCTCATGGCGGAAGCC
GTGCGTCACTATCAATCGATGGGCTTCACGATCGCGCTGGACGATCTGGGCGAGGGGTATGCCAGCCTGCGTCTGTGGTC
ACAGATTCGCCCCGACTTCGTCAAGCTCGATCGACATTTCGTCAGCGAGCTGGATCGCGATCGCGTCAAACGCCGGTTCG
TGAGGGCGTTTCTGGACGTTGCCCATGGCGTGGGGTCGCGTGTCATCGCCGAAGGCGTGGAGCGGGAAGAAGAGCTCGAT
TGCCTGCATGCACTGGGGGCGGATTACTATCAAGGCTGGTTGTTCGCGCGGCCGTCGCCGACACCGAAAGCTACGCGTCT
TGAGTTGAACGAGCGCCTTGCCCAGCTGGCCGCACGGCAAGAAAGCCCGCTGCAGGAGTGTGTGGCGCGACATGTCTGCA
AGTGGCAGCCTGCGCTCGCCATGACGGTGACCGTCGCCGAAGCGAGCGAACGCTTCAGTGCCGCGCCGGACGTGGCAGCG
ATGGCCGTGGTGGACGACCAGGAAATGCCCATCGGCGTCTTGACGCGTGAAGCGGTGATGGCGCTGGTGGGCAAGCGCTT
CGGCTTCGACCTGCACGGTCGCGACCCCGTGACCAGCGCGATGCACGTGGCGCCGCTGTGCGTCGAGGTCACGGAGCCCC
TCGATCAGGTATCGCGCAAGGTGACGGGACGCGACAGCGACCAGCGCGCCGAGCCTTTCGTCGTCACCCAGCGCGGCCGC
TACGTGGGCATGGGACAGATCGTGGCATTGCTGCAGCAGATCACCGAGCAGAAGGTGGCGATCGCGCGTCAGGCCAATCC
CTTGACGCAATTGCCGGGCAATGCGCCCGTGCGTGCGGCGCTGGATGCCTTCGTTCGTGCGCGGAAATCCTTCGTGGCCT
GCTATCTCGACCTCGATCACTTCAAGCCGTTCAACGACCGCTTCGGGTATGCCCTGGGCGACCAGGTGTTGCTGGATGTC
GCCGGCACGCTGGGCGAGGCCAAGGGGGCGCATGATTTCCTGGGGCATCTGGGCGGCGATGACTTCGTGCTGTTATTGGC
GCCTCGAGAACGGCTGCAGTGTTTCCTGGCGGCGATTCAAGCGGAGTTTTCGGCGCGTGTCGCCTCGCGGGTGCCGGCTG
CCGTGGTCGAGGAGGGCGGTTTCACCGCACAGGACCGCTTCGGGCAACAACGCTTCTTTCCGCTGCCGCGGCTCACGGTG
GCGGCCTTGAACGTGCCGGGCGGGCTGGCCCCCCAGAGTTTCGGCGATTGCTGGGGACCGCTCAAGCAAAGTGCCAAGCG
TACCGAGAATGGCCGCCTGGTCGTGCGCATGCGGGGAGAAACCTTCGCCGCGTCGTGA

Upstream 100 bases:

>100_bases
CGATCGACCCTTCCACCTACCAGCGCGATTCGTGATGCGCTGATCCGGCTGGGTGTCGAGGCGGCGCGGCCGGCGCGCGC
CGCGGCATGGCCGGTGTCAC

Downstream 100 bases:

>100_bases
TGTCGGAGAGGAAGCATCCCGCATCGTCGTCAAGGTTCGTGTCATCAGTGGTGCGTCCGGCAAGACGCGCCGCGCGTTCC
GTTCCATACTCATGGATACA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MNVMGNWPNGAMTHPCPPASTTEATDPSLSAIVREGRIDVHFQPIVAIRSGRVFAYEALSRGPHDTVYAHPLTMFEAARK
QSLLAPLEAVCRHRAITAWADQELDELLFINVSPEVLLDPKHRSGETLRLLTRLGIPPHRLVIELTEQSPGIDPDLMAEA
VRHYQSMGFTIALDDLGEGYASLRLWSQIRPDFVKLDRHFVSELDRDRVKRRFVRAFLDVAHGVGSRVIAEGVEREEELD
CLHALGADYYQGWLFARPSPTPKATRLELNERLAQLAARQESPLQECVARHVCKWQPALAMTVTVAEASERFSAAPDVAA
MAVVDDQEMPIGVLTREAVMALVGKRFGFDLHGRDPVTSAMHVAPLCVEVTEPLDQVSRKVTGRDSDQRAEPFVVTQRGR
YVGMGQIVALLQQITEQKVAIARQANPLTQLPGNAPVRAALDAFVRARKSFVACYLDLDHFKPFNDRFGYALGDQVLLDV
AGTLGEAKGAHDFLGHLGGDDFVLLLAPRERLQCFLAAIQAEFSARVASRVPAAVVEEGGFTAQDRFGQQRFFPLPRLTV
AALNVPGGLAPQSFGDCWGPLKQSAKRTENGRLVVRMRGETFAAS

Sequences:

>Translated_605_residues
MNVMGNWPNGAMTHPCPPASTTEATDPSLSAIVREGRIDVHFQPIVAIRSGRVFAYEALSRGPHDTVYAHPLTMFEAARK
QSLLAPLEAVCRHRAITAWADQELDELLFINVSPEVLLDPKHRSGETLRLLTRLGIPPHRLVIELTEQSPGIDPDLMAEA
VRHYQSMGFTIALDDLGEGYASLRLWSQIRPDFVKLDRHFVSELDRDRVKRRFVRAFLDVAHGVGSRVIAEGVEREEELD
CLHALGADYYQGWLFARPSPTPKATRLELNERLAQLAARQESPLQECVARHVCKWQPALAMTVTVAEASERFSAAPDVAA
MAVVDDQEMPIGVLTREAVMALVGKRFGFDLHGRDPVTSAMHVAPLCVEVTEPLDQVSRKVTGRDSDQRAEPFVVTQRGR
YVGMGQIVALLQQITEQKVAIARQANPLTQLPGNAPVRAALDAFVRARKSFVACYLDLDHFKPFNDRFGYALGDQVLLDV
AGTLGEAKGAHDFLGHLGGDDFVLLLAPRERLQCFLAAIQAEFSARVASRVPAAVVEEGGFTAQDRFGQQRFFPLPRLTV
AALNVPGGLAPQSFGDCWGPLKQSAKRTENGRLVVRMRGETFAAS
>Mature_605_residues
MNVMGNWPNGAMTHPCPPASTTEATDPSLSAIVREGRIDVHFQPIVAIRSGRVFAYEALSRGPHDTVYAHPLTMFEAARK
QSLLAPLEAVCRHRAITAWADQELDELLFINVSPEVLLDPKHRSGETLRLLTRLGIPPHRLVIELTEQSPGIDPDLMAEA
VRHYQSMGFTIALDDLGEGYASLRLWSQIRPDFVKLDRHFVSELDRDRVKRRFVRAFLDVAHGVGSRVIAEGVEREEELD
CLHALGADYYQGWLFARPSPTPKATRLELNERLAQLAARQESPLQECVARHVCKWQPALAMTVTVAEASERFSAAPDVAA
MAVVDDQEMPIGVLTREAVMALVGKRFGFDLHGRDPVTSAMHVAPLCVEVTEPLDQVSRKVTGRDSDQRAEPFVVTQRGR
YVGMGQIVALLQQITEQKVAIARQANPLTQLPGNAPVRAALDAFVRARKSFVACYLDLDHFKPFNDRFGYALGDQVLLDV
AGTLGEAKGAHDFLGHLGGDDFVLLLAPRERLQCFLAAIQAEFSARVASRVPAAVVEEGGFTAQDRFGQQRFFPLPRLTV
AALNVPGGLAPQSFGDCWGPLKQSAKRTENGRLVVRMRGETFAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=29.3859649122807, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1790496, Length=229, Percent_Identity=27.0742358078603, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87082096, Length=151, Percent_Identity=32.4503311258278, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=243, Percent_Identity=29.6296296296296, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI226510982, Length=230, Percent_Identity=32.1739130434783, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=29.3103448275862, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1786507, Length=155, Percent_Identity=34.8387096774194, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=28.6290322580645, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787410, Length=238, Percent_Identity=25.6302521008403, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788849, Length=151, Percent_Identity=30.4635761589404, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=28.8793103448276, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=25.8771929824561, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=22.4066390041494, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 66692; Mature: 66692

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVMGNWPNGAMTHPCPPASTTEATDPSLSAIVREGRIDVHFQPIVAIRSGRVFAYEALS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEHHHC
RGPHDTVYAHPLTMFEAARKQSLLAPLEAVCRHRAITAWADQELDELLFINVSPEVLLDP
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCEEECC
KHRSGETLRLLTRLGIPPHRLVIELTEQSPGIDPDLMAEAVRHYQSMGFTIALDDLGEGY
CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCH
ASLRLWSQIRPDFVKLDRHFVSELDRDRVKRRFVRAFLDVAHGVGSRVIAEGVEREEELD
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHH
CLHALGADYYQGWLFARPSPTPKATRLELNERLAQLAARQESPLQECVARHVCKWQPALA
HHHHHCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
MTVTVAEASERFSAAPDVAAMAVVDDQEMPIGVLTREAVMALVGKRFGFDLHGRDPVTSA
EEEEEHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
MHVAPLCVEVTEPLDQVSRKVTGRDSDQRAEPFVVTQRGRYVGMGQIVALLQQITEQKVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHHHHH
IARQANPLTQLPGNAPVRAALDAFVRARKSFVACYLDLDHFKPFNDRFGYALGDQVLLDV
HHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCCCHHHHHHHHHH
AGTLGEAKGAHDFLGHLGGDDFVLLLAPRERLQCFLAAIQAEFSARVASRVPAAVVEEGG
HHHHHCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
FTAQDRFGQQRFFPLPRLTVAALNVPGGLAPQSFGDCWGPLKQSAKRTENGRLVVRMRGE
CCHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
TFAAS
CCCCC
>Mature Secondary Structure
MNVMGNWPNGAMTHPCPPASTTEATDPSLSAIVREGRIDVHFQPIVAIRSGRVFAYEALS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEHHHC
RGPHDTVYAHPLTMFEAARKQSLLAPLEAVCRHRAITAWADQELDELLFINVSPEVLLDP
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCCEEECC
KHRSGETLRLLTRLGIPPHRLVIELTEQSPGIDPDLMAEAVRHYQSMGFTIALDDLGEGY
CCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCH
ASLRLWSQIRPDFVKLDRHFVSELDRDRVKRRFVRAFLDVAHGVGSRVIAEGVEREEELD
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHH
CLHALGADYYQGWLFARPSPTPKATRLELNERLAQLAARQESPLQECVARHVCKWQPALA
HHHHHCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
MTVTVAEASERFSAAPDVAAMAVVDDQEMPIGVLTREAVMALVGKRFGFDLHGRDPVTSA
EEEEEHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
MHVAPLCVEVTEPLDQVSRKVTGRDSDQRAEPFVVTQRGRYVGMGQIVALLQQITEQKVA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHHHHH
IARQANPLTQLPGNAPVRAALDAFVRARKSFVACYLDLDHFKPFNDRFGYALGDQVLLDV
HHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEHHHCCCCCCCCCCHHHHHHHHHH
AGTLGEAKGAHDFLGHLGGDDFVLLLAPRERLQCFLAAIQAEFSARVASRVPAAVVEEGG
HHHHHCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
FTAQDRFGQQRFFPLPRLTVAALNVPGGLAPQSFGDCWGPLKQSAKRTENGRLVVRMRGE
CCHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
TFAAS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]