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The map label for this gene is scpB [H]

Identifier: 92112978

GI number: 92112978

Start: 950043

End: 950906

Strand: Direct

Name: scpB [H]

Synonym: Csal_0850

Alternate gene names: 92112978

Gene position: 950043-950906 (Clockwise)

Preceding gene: 92112977

Following gene: 92112979

Centisome position: 25.7

GC content: 66.67

Gene sequence:

>864_bases
ATGAACGAGGCGCCCACGTCTCTCGACGAGGTCTGCGAAGCCGCGTTGCTGGCTGCCGGCGAGCCGCTGACGCCGGAGCG
TCTGGAAACCCTGTTCGACGAGCGCGAGCGTCCCTCGCGCGGCGAGCTGCGCGACGCCCTGGCGCGTTTGGGCGAGCGCC
TCGAGAACAGCGCCCTGGAACTCGTCGAAACCGCTTCGGGCTTTCAGGTGCGGATTCGTGCGCGTTTTTCGCCGTGGATC
TCGCGACTCTGGGACGAGCGGCCGCAGCGCTATTCGCGCGCGTTACTGGAGACCCTGGCATTGATCGCCTATCGTCAACC
GGTGACCCGAGGCGATATCGAAGAGGTGCGTGGCGTCTCGGTGAGCAGCTCGATCGTGCGTACCTTGACCGAGCGAGGCT
GGATTCGCGTGGTGGGACAGCGCGATGTGCCGGGGCGGCCGTCGGTCTATGCCACGACGCGTACCTTCCTCGACGATTTC
GGCCTCAAGACCCTCGATGCGTTGCCACCGATGCACGAGCTCAAGGAGTTCGAGGCGCGTTTCGAGGAGGCCCTGGGGCA
TACCGACGCGTCGTCGGCATCAGTGCGTGACACTCACGCCGACAACGCCGAGAATATGCCGCCGGACGACGATGCCCCGC
AGGCATCCGAAGCCACGCAAGACATCACGACGACCGAGACGGTCGACGACCAGCACGCCGAGACGGCGTCCGAGCGGTCG
GGATTGAGCTTCGCCGAACTCGAGGCTCGCCTGGCCGAACGCGCCCGCCGGCGCACCGAGCAGGCCGAATCGTCCCGAGC
GGGCGACGACGCCTCCGCGGCGGACGCGGAACATTCATCAGACGAGACAACGTTCGATCCATGA

Upstream 100 bases:

>100_bases
TGCGCGCGCGTCTGACGCCGGACGTCGACGACGACGGCAGCGGGGCGGAGGACGACGATGGCGGAGAAAGTGCCTTCGCC
GATGCCGAAGAGGAACCGCA

Downstream 100 bases:

>100_bases
ACACGCCTACCGAGAAATTACAGAAGGTCCTGGCCCGCGCGGGCTTCGGCTCGCGCCGCGAGATGGAGACCGCCATCGCC
GATGGCCGCGTCAAGGTCAA

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNEAPTSLDEVCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQVRIRARFSPWI
SRLWDERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTLTERGWIRVVGQRDVPGRPSVYATTRTFLDDF
GLKTLDALPPMHELKEFEARFEEALGHTDASSASVRDTHADNAENMPPDDDAPQASEATQDITTTETVDDQHAETASERS
GLSFAELEARLAERARRRTEQAESSRAGDDASAADAEHSSDETTFDP

Sequences:

>Translated_287_residues
MNEAPTSLDEVCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQVRIRARFSPWI
SRLWDERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTLTERGWIRVVGQRDVPGRPSVYATTRTFLDDF
GLKTLDALPPMHELKEFEARFEEALGHTDASSASVRDTHADNAENMPPDDDAPQASEATQDITTTETVDDQHAETASERS
GLSFAELEARLAERARRRTEQAESSRAGDDASAADAEHSSDETTFDP
>Mature_287_residues
MNEAPTSLDEVCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALELVETASGFQVRIRARFSPWI
SRLWDERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVSVSSSIVRTLTERGWIRVVGQRDVPGRPSVYATTRTFLDDF
GLKTLDALPPMHELKEFEARFEEALGHTDASSASVRDTHADNAENMPPDDDAPQASEATQDITTTETVDDQHAETASERS
GLSFAELEARLAERARRRTEQAESSRAGDDASAADAEHSSDETTFDP

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 31883; Mature: 31883

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAPTSLDEVCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALE
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LVETASGFQVRIRARFSPWISRLWDERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVS
HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
VSSSIVRTLTERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPMHELKEFEAR
HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
FEEALGHTDASSASVRDTHADNAENMPPDDDAPQASEATQDITTTETVDDQHAETASERS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHC
GLSFAELEARLAERARRRTEQAESSRAGDDASAADAEHSSDETTFDP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNEAPTSLDEVCEAALLAAGEPLTPERLETLFDERERPSRGELRDALARLGERLENSALE
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LVETASGFQVRIRARFSPWISRLWDERPQRYSRALLETLALIAYRQPVTRGDIEEVRGVS
HHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
VSSSIVRTLTERGWIRVVGQRDVPGRPSVYATTRTFLDDFGLKTLDALPPMHELKEFEAR
HHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
FEEALGHTDASSASVRDTHADNAENMPPDDDAPQASEATQDITTTETVDDQHAETASERS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCHHHHHHHHHHC
GLSFAELEARLAERARRRTEQAESSRAGDDASAADAEHSSDETTFDP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]