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The map label for this gene is yeaM [H]

Identifier: 92112875

GI number: 92112875

Start: 840043

End: 840843

Strand: Direct

Name: yeaM [H]

Synonym: Csal_0746

Alternate gene names: 92112875

Gene position: 840043-840843 (Clockwise)

Preceding gene: 92112869

Following gene: 92112877

Centisome position: 22.72

GC content: 50.44

Gene sequence:

>801_bases
ATGACTGCTCAAAACGGCCAAGATGTCTGGCACGAGGATATCCTCGATGATTCTGCAATTGCTGTTTTGTCTTACCCGAT
AGGGGAAATGCAGCGAGATCAGCTCCATAGTCACGGATATCACCAGATAGCGATGTGTGAGCAACCTGGAGCGACATTGC
TTCTCGGTTCTCAGGTTGTCAGCATCCCATGGAATGGTGCTTTGCTGGTGCCGAGCGGTACCGATCATGCCCTGACGTCC
GAAACCCGGTGCGTCATAAGGTGCATCTATTTCAAAGCTGCACTCCCGAGCACATCAATCGGATCGCTATTTCTCAATCG
GCTTACAAAGGAGTTGATCAAAGAGATCTCTACGTCATACGTGACGGAGAGGTCGCGCCGGTTAATGGAGGCATGCCTAT
ACGATCAGATTGGTCAGCTTCTATGGTCATCAGGAAGCGGGATGATGCCCCCATCACGCTCACTTAGGGTGATCTGTAAG
CATATTTTTGACACACCCGAAGATGATACTCCTGTCGCAACGCTGGCAAAGGACGCAGGTTTAAGCGAGCGATCTTTGCG
TCGTTTAGCACGTGACGAGCTTGGCTGCACTATTTCTCAGATTCGGACTCGGTGCCGAATCTACAAGGCTACTCAGCTAT
TGCAGGCTGGTGTTCCTGTGAAATTAATTGCGGCCGATGTAGGCTACCAATCCAACAGCGCTTTTTTTTCAGCATTTCGG
GAGATAATGGGTATGTCTCCGGCCCGCTTCCAAGCAGAGTGTGCCGCTTCCCGTAGCCTCAGTCATTTACGATTAAAATG
A

Upstream 100 bases:

>100_bases
GCTAAGAGGTATGCTCATCACTGCACTCCCTGTGTTTTACGTTGCGTGACTATAATAAAGTAGTTAAATTGAATAGACCC
ATGTTACGGATTTCGGACAA

Downstream 100 bases:

>100_bases
TGAAGGTTTTGGTGGTATGAAGGTCCGTCTAGCGAGCCAACAGGCAGCGCAGGCCAGCACTTTTCCGGTTTGTTAGAGGT
TGATGTGGCACAGTACCAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTAQNGQDVWHEDILDDSAIAVLSYPIGEMQRDQLHSHGYHQIAMCEQPGATLLLGSQVVSIPWNGALLVPSGTDHALTS
ETRCVIRCIYFKAALPSTSIGSLFLNRLTKELIKEISTSYVTERSRRLMEACLYDQIGQLLWSSGSGMMPPSRSLRVICK
HIFDTPEDDTPVATLAKDAGLSERSLRRLARDELGCTISQIRTRCRIYKATQLLQAGVPVKLIAADVGYQSNSAFFSAFR
EIMGMSPARFQAECAASRSLSHLRLK

Sequences:

>Translated_266_residues
MTAQNGQDVWHEDILDDSAIAVLSYPIGEMQRDQLHSHGYHQIAMCEQPGATLLLGSQVVSIPWNGALLVPSGTDHALTS
ETRCVIRCIYFKAALPSTSIGSLFLNRLTKELIKEISTSYVTERSRRLMEACLYDQIGQLLWSSGSGMMPPSRSLRVICK
HIFDTPEDDTPVATLAKDAGLSERSLRRLARDELGCTISQIRTRCRIYKATQLLQAGVPVKLIAADVGYQSNSAFFSAFR
EIMGMSPARFQAECAASRSLSHLRLK
>Mature_265_residues
TAQNGQDVWHEDILDDSAIAVLSYPIGEMQRDQLHSHGYHQIAMCEQPGATLLLGSQVVSIPWNGALLVPSGTDHALTSE
TRCVIRCIYFKAALPSTSIGSLFLNRLTKELIKEISTSYVTERSRRLMEACLYDQIGQLLWSSGSGMMPPSRSLRVICKH
IFDTPEDDTPVATLAKDAGLSERSLRRLARDELGCTISQIRTRCRIYKATQLLQAGVPVKLIAADVGYQSNSAFFSAFRE
IMGMSPARFQAECAASRSLSHLRLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=24.5535714285714, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29421; Mature: 29290

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQNGQDVWHEDILDDSAIAVLSYPIGEMQRDQLHSHGYHQIAMCEQPGATLLLGSQVV
CCCCCCCHHHHHHHCCCCHHEEEECCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCEEE
SIPWNGALLVPSGTDHALTSETRCVIRCIYFKAALPSTSIGSLFLNRLTKELIKEISTSY
EECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VTERSRRLMEACLYDQIGQLLWSSGSGMMPPSRSLRVICKHIFDTPEDDTPVATLAKDAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCC
LSERSLRRLARDELGCTISQIRTRCRIYKATQLLQAGVPVKLIAADVGYQSNSAFFSAFR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
EIMGMSPARFQAECAASRSLSHLRLK
HHHCCCCCHHHHHHHHHHCHHHHCCC
>Mature Secondary Structure 
TAQNGQDVWHEDILDDSAIAVLSYPIGEMQRDQLHSHGYHQIAMCEQPGATLLLGSQVV
CCCCCCHHHHHHHCCCCHHEEEECCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCEEE
SIPWNGALLVPSGTDHALTSETRCVIRCIYFKAALPSTSIGSLFLNRLTKELIKEISTSY
EECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VTERSRRLMEACLYDQIGQLLWSSGSGMMPPSRSLRVICKHIFDTPEDDTPVATLAKDAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCC
LSERSLRRLARDELGCTISQIRTRCRIYKATQLLQAGVPVKLIAADVGYQSNSAFFSAFR
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
EIMGMSPARFQAECAASRSLSHLRLK
HHHCCCCCHHHHHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]