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The map label for this gene is ycjO [C]

Identifier: 92112767

GI number: 92112767

Start: 711992

End: 712879

Strand: Direct

Name: ycjO [C]

Synonym: Csal_0634

Alternate gene names: 92112767

Gene position: 711992-712879 (Clockwise)

Preceding gene: 92112766

Following gene: 92112768

Centisome position: 19.26

GC content: 62.73

Gene sequence:

>888_bases
ATGCGCGAGAGAACGTCCGGACGAACCGTCGGCGGCTTCCGCAACGTGTTCCTGCAGGGACCGGCGGTGACGTTGCTGCT
GCTGTGGATGCTGGTGCCACTGGGCATGACCCTGTGGTTCTCCTTCCAGCGCTATAACCTGATCAATCCCATGATTTCCG
GTTTCGCCGGCTGGGATAACTATACCTATCTGCTCACCGATCCGGCCTTGTGGACGGCGATGGGCAACACCCTGCTGCTG
GTCGGCTGGGTGCTGGCGATCAGCGTGATCGGCGGCACGCTGCTGGCGGTGCTCTTCCAGCAGGAGTTCTTCGGTCGCGG
CATCGCCCGCCTGCTGGTGATCGCGCCGTTCTTCGTCATGCCCACGGTCGGCGCCCTGGTGTGGAAGAACATGCTGATGC
ACCCGGTCAACGGCGTGTTCGCCTGGCTGAGCGGCCTGCTCGGGCTGCCGGTGATCGACTGGTTCTCGTCGATGCCGCTG
GCGTCGATCATCATCATCGTCGCTTGGCAGTGGATGCCGTTCGCCTTGCTGATCCTGCTCACCGCCATCCAGTCCCTGGA
CGATGACCAGGTCGAAGCAGCGCGCATGGACGGTGCCGGACCGCTGGCGATCTTCTGGTTCATCACCCTGCCGCACCTGA
AGCGGGCGATCAGCGTGGTGATCATGATCGAGATGATCTTCCTGCTGACGATTTTCGCCGAGATATTCGTCACCACCTCG
GGCGGCCCGGGGCTGGCCTCGACCAATCTGGCCTATTTCATCTACATCCGCGCGTTGCTGGACTTCGACGTGGGCGGCGC
CTCGGCCGGCGGTGTCATCGCCATCATCCTGGCCAACATCGTGGCGATCTTCTTGATCCGCACCGTGGCCAAGAATCTCG
AGACCTGA

Upstream 100 bases:

>100_bases
CCAGGCGGGATACTACGACTAAGCGATAGCCTCCCGCCGCGGCCGGATCGTCATGATCCGGCCGCCTTTTCCGACCTGTT
TCCTTCAATGGGGCATTCCC

Downstream 100 bases:

>100_bases
GGCGAGGAGCACTGCATGAATCCTACGATGACCAAGAAACTGCTGCTCACGCTGCTCGCCTGGGGCATCGCGTTGATCGT
GTTCTTTCCGATCTTCTGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRERTSGRTVGGFRNVFLQGPAVTLLLLWMLVPLGMTLWFSFQRYNLINPMISGFAGWDNYTYLLTDPALWTAMGNTLLL
VGWVLAISVIGGTLLAVLFQQEFFGRGIARLLVIAPFFVMPTVGALVWKNMLMHPVNGVFAWLSGLLGLPVIDWFSSMPL
ASIIIIVAWQWMPFALLILLTAIQSLDDDQVEAARMDGAGPLAIFWFITLPHLKRAISVVIMIEMIFLLTIFAEIFVTTS
GGPGLASTNLAYFIYIRALLDFDVGGASAGGVIAIILANIVAIFLIRTVAKNLET

Sequences:

>Translated_295_residues
MRERTSGRTVGGFRNVFLQGPAVTLLLLWMLVPLGMTLWFSFQRYNLINPMISGFAGWDNYTYLLTDPALWTAMGNTLLL
VGWVLAISVIGGTLLAVLFQQEFFGRGIARLLVIAPFFVMPTVGALVWKNMLMHPVNGVFAWLSGLLGLPVIDWFSSMPL
ASIIIIVAWQWMPFALLILLTAIQSLDDDQVEAARMDGAGPLAIFWFITLPHLKRAISVVIMIEMIFLLTIFAEIFVTTS
GGPGLASTNLAYFIYIRALLDFDVGGASAGGVIAIILANIVAIFLIRTVAKNLET
>Mature_295_residues
MRERTSGRTVGGFRNVFLQGPAVTLLLLWMLVPLGMTLWFSFQRYNLINPMISGFAGWDNYTYLLTDPALWTAMGNTLLL
VGWVLAISVIGGTLLAVLFQQEFFGRGIARLLVIAPFFVMPTVGALVWKNMLMHPVNGVFAWLSGLLGLPVIDWFSSMPL
ASIIIIVAWQWMPFALLILLTAIQSLDDDQVEAARMDGAGPLAIFWFITLPHLKRAISVVIMIEMIFLLTIFAEIFVTTS
GGPGLASTNLAYFIYIRALLDFDVGGASAGGVIAIILANIVAIFLIRTVAKNLET

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=273, Percent_Identity=29.3040293040293, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790465, Length=244, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789861, Length=284, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32416; Mature: 32416

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERTSGRTVGGFRNVFLQGPAVTLLLLWMLVPLGMTLWFSFQRYNLINPMISGFAGWDN
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YTYLLTDPALWTAMGNTLLLVGWVLAISVIGGTLLAVLFQQEFFGRGIARLLVIAPFFVM
CEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTVGALVWKNMLMHPVNGVFAWLSGLLGLPVIDWFSSMPLASIIIIVAWQWMPFALLILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TAIQSLDDDQVEAARMDGAGPLAIFWFITLPHLKRAISVVIMIEMIFLLTIFAEIFVTTS
HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGPGLASTNLAYFIYIRALLDFDVGGASAGGVIAIILANIVAIFLIRTVAKNLET
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRERTSGRTVGGFRNVFLQGPAVTLLLLWMLVPLGMTLWFSFQRYNLINPMISGFAGWDN
CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YTYLLTDPALWTAMGNTLLLVGWVLAISVIGGTLLAVLFQQEFFGRGIARLLVIAPFFVM
CEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTVGALVWKNMLMHPVNGVFAWLSGLLGLPVIDWFSSMPLASIIIIVAWQWMPFALLILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TAIQSLDDDQVEAARMDGAGPLAIFWFITLPHLKRAISVVIMIEMIFLLTIFAEIFVTTS
HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGPGLASTNLAYFIYIRALLDFDVGGASAGGVIAIILANIVAIFLIRTVAKNLET
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]