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The map label for this gene is lsrR [H]

Identifier: 92112765

GI number: 92112765

Start: 709532

End: 710488

Strand: Direct

Name: lsrR [H]

Synonym: Csal_0632

Alternate gene names: 92112765

Gene position: 709532-710488 (Clockwise)

Preceding gene: 92112764

Following gene: 92112766

Centisome position: 19.19

GC content: 66.98

Gene sequence:

>957_bases
ATGGATAAATACGAACTCAAGCGCGAGCAGGCGGCGCGCGCGGCCTGGCTCTCCTACGTCGGTGGGCGCACGCAGGACGA
TATCGCCCGCCTGCTGGGCGTCTCGCGACCCGGGGTCCAGCGCTTGCTGGCCCTGGCGCGTCAGGAAGGGCTGGTCAAGG
TACATGTCGATCATCCCATCTCCCAGTGCATGGCCATGGGCGAGGCGATTCTCACGCACTTCGGATTGGATTTCTGCGAT
GTGGTGCCCAGCGACCCCGAGCTGCCGGAAAGCAGTCCTCGCTTTCTCGCCCAGGCCGGCGCCGAACGGCTGGCGAGCCT
TCTCGATCGTCAAGCGCCCCTGACGCTGTCGCTGGGTACCGGGCGTTCGGTGCGTGCCACCGTGGAAGCCCTGAGTCGCC
TGGATCGCTCGCAGCATCGTATCGTCTCGCTGGTGGGCAATGTCGCCCGCGACGGTTCCGCCAACCGCTATGACGGGGTG
ATGGTCCTGGCCGACAAGACCGGGGCGGAGCGCTTCCTGCTGCCCGCGCCGGTAGTGGCCGCCTCGGTGGAAGAGAAGGA
AGCGTTGCTTGCCCAGCAGCTGGTGCAGGCGGTGTTTCATATCGCCCGCGAGGCCGAAACCGGGGTCATCGGCATTGGCC
GCATCGATCCGCGCGCGACCCTGTTCCAGGATCATTTCATCAGCGAGGCCGAACTCAACGAGCTGCTCGAGGCCGGTGCG
GTAGGAGAACTGCTCGGCTGGCCGCTGGATATCCAGGGACGGCTCATCGACTGTCCGATCACGCGTCGCATCACCAGCCT
GCCGCTCTCGGCACTGGGCGGGCAGCCGCTGATGGGCCTGGCGGGCGGGCACGACAAGGGGCCGGCCATCCTGAGCGCCC
TGCGAGGCGGCTGGCTCAAGGGACTGGTGACGGACGAAGCGGCGGCTCGCTATATCGTGTCCGCATTGGGGGCTTAG

Upstream 100 bases:

>100_bases
GCGTGCGCGGTTGCGATGATGCCTGGCATTGGCGTTCGACAGACGTGATGTTCAAGTACGTGGTCGTCCGGTAACGGGCC
TTCCATCAGGAGCAGCGGCG

Downstream 100 bases:

>100_bases
GCCAAAGTCTAAGCGTGAGGGGTTTGCTTTTTTTGGCGCTGCAAATGATCATTTGAATACTCGATGAGTAGATTGATCAA
AACAAATTCAATGATCTTCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDKYELKREQAARAAWLSYVGGRTQDDIARLLGVSRPGVQRLLALARQEGLVKVHVDHPISQCMAMGEAILTHFGLDFCD
VVPSDPELPESSPRFLAQAGAERLASLLDRQAPLTLSLGTGRSVRATVEALSRLDRSQHRIVSLVGNVARDGSANRYDGV
MVLADKTGAERFLLPAPVVAASVEEKEALLAQQLVQAVFHIAREAETGVIGIGRIDPRATLFQDHFISEAELNELLEAGA
VGELLGWPLDIQGRLIDCPITRRITSLPLSALGGQPLMGLAGGHDKGPAILSALRGGWLKGLVTDEAAARYIVSALGA

Sequences:

>Translated_318_residues
MDKYELKREQAARAAWLSYVGGRTQDDIARLLGVSRPGVQRLLALARQEGLVKVHVDHPISQCMAMGEAILTHFGLDFCD
VVPSDPELPESSPRFLAQAGAERLASLLDRQAPLTLSLGTGRSVRATVEALSRLDRSQHRIVSLVGNVARDGSANRYDGV
MVLADKTGAERFLLPAPVVAASVEEKEALLAQQLVQAVFHIAREAETGVIGIGRIDPRATLFQDHFISEAELNELLEAGA
VGELLGWPLDIQGRLIDCPITRRITSLPLSALGGQPLMGLAGGHDKGPAILSALRGGWLKGLVTDEAAARYIVSALGA
>Mature_318_residues
MDKYELKREQAARAAWLSYVGGRTQDDIARLLGVSRPGVQRLLALARQEGLVKVHVDHPISQCMAMGEAILTHFGLDFCD
VVPSDPELPESSPRFLAQAGAERLASLLDRQAPLTLSLGTGRSVRATVEALSRLDRSQHRIVSLVGNVARDGSANRYDGV
MVLADKTGAERFLLPAPVVAASVEEKEALLAQQLVQAVFHIAREAETGVIGIGRIDPRATLFQDHFISEAELNELLEAGA
VGELLGWPLDIQGRLIDCPITRRITSLPLSALGGQPLMGLAGGHDKGPAILSALRGGWLKGLVTDEAAARYIVSALGA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=314, Percent_Identity=31.5286624203822, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87082414, Length=311, Percent_Identity=22.8295819935691, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34009; Mature: 34009

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKYELKREQAARAAWLSYVGGRTQDDIARLLGVSRPGVQRLLALARQEGLVKVHVDHPI
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCHH
SQCMAMGEAILTHFGLDFCDVVPSDPELPESSPRFLAQAGAERLASLLDRQAPLTLSLGT
HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
GRSVRATVEALSRLDRSQHRIVSLVGNVARDGSANRYDGVMVLADKTGAERFLLPAPVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCHHH
ASVEEKEALLAQQLVQAVFHIAREAETGVIGIGRIDPRATLFQDHFISEAELNELLEAGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCC
VGELLGWPLDIQGRLIDCPITRRITSLPLSALGGQPLMGLAGGHDKGPAILSALRGGWLK
HHHHHCCCCCCCCEEECCCHHHHHHHCCHHHCCCCCCEECCCCCCCHHHHHHHHHCHHHH
GLVTDEAAARYIVSALGA
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKYELKREQAARAAWLSYVGGRTQDDIARLLGVSRPGVQRLLALARQEGLVKVHVDHPI
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCHH
SQCMAMGEAILTHFGLDFCDVVPSDPELPESSPRFLAQAGAERLASLLDRQAPLTLSLGT
HHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
GRSVRATVEALSRLDRSQHRIVSLVGNVARDGSANRYDGVMVLADKTGAERFLLPAPVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEECCCCHHH
ASVEEKEALLAQQLVQAVFHIAREAETGVIGIGRIDPRATLFQDHFISEAELNELLEAGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCC
VGELLGWPLDIQGRLIDCPITRRITSLPLSALGGQPLMGLAGGHDKGPAILSALRGGWLK
HHHHHCCCCCCCCEEECCCHHHHHHHCCHHHCCCCCCEECCCCCCCHHHHHHHHHCHHHH
GLVTDEAAARYIVSALGA
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA